CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG36845

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	KXG36845	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013411_P002	Maize	plastid	89.16	88.94
Zm00001d033787_P001	Maize	plastid	90.36	88.65
TraesCS4B01G050500.1	Wheat	plastid	76.14	77.26
HORVU4Hr1G008300.1	Barley	plastid	75.42	76.72
TraesCS4D01G050700.1	Wheat	plastid	75.42	76.34
TraesCS4A01G264500.1	Wheat	plastid	75.9	76.27
Os03t0717900-01	Rice	cytosol	78.31	71.43
GSMUA_Achr1P22120_001	Banana	plastid	61.45	66.41
GSMUA_Achr8P30820_001	Banana	mitochondrion	63.37	63.22
CDX82345	Canola	plastid	58.55	59.85
Solyc03g098000.2.1	Tomato	plastid	55.66	59.84
CDX95820	Canola	plastid	59.52	59.52
Bra001683.1-P	Field mustard	plastid	57.83	58.82
CDY19857	Canola	nucleus	14.7	58.65
CDX75937	Canola	plastid	58.31	58.45
Bra022245.1-P	Field mustard	plastid	58.31	58.31
Bra032255.1-P	Field mustard	plastid	57.11	58.23
CDY23684	Canola	plastid	57.11	58.23
AT3G17800.2	Thale cress	plastid	59.76	58.08
CDX92162	Canola	plastid	57.83	57.83
KRH60570	Soybean	plastid	54.7	56.75
CDY58279	Canola	plastid	57.83	56.47
KRH41876	Soybean	plastid	54.94	56.44
PGSC0003DMT400083980	Potato	plastid	56.87	56.06
KRH39016	Soybean	plastid	55.18	55.31
VIT_17s0119g00070.t01	Wine grape	plastid	55.66	55.13
AT1G48450.1	Thale cress	plastid	56.14	55.08
KRH48705	Soybean	plastid	53.98	54.9
VIT_15s0024g00690.t01	Wine grape	plastid	46.51	46.96
EES12774	Sorghum	plastid	38.31	39.55

Protein Annotations

EnsemblPlants:KXG37708	EnsemblPlantsGene:SORBI_3001G112900	InterPro:At3g17800-like	InterPro:DUF760	ncoils:Coil	PANTHER:PTHR31808
PANTHER:PTHR31808:SF4	PFAM:PF05542	ProteinID:KXG37708	ProteinID:KXG37708.1	SEG:seg	UniParc:UPI0001C80D20
UniProt:A0A1B6QIG1	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:8854862..8857106

Molecular Weight (calculated)

46113.5 Da

IEP (calculated)

7.103

GRAVY (calculated)

-0.450

Length

415 amino acids

Sequence
(BLAST)

001: MEAAVAAALR SPTAAGPSRR SAAPGPSSLP FDRRRSFAFG SIKGLGRQQL TSRTRRRSSV VRASWSPSES LPPSSSIAPL RMESPAGQLL SQILHTHPHL
101: LSAAAEQQLE QLQTDREAEK EKEKESEAGD KSTPTGGDLV LYRRIAEVKE KERRRTLEEI LYALVVQKFV EADVSLVPAL SHSIDSSGRV DQWTETVEEK
201: LQRLHSPEAY EMIENHLSLI LGQRQGDATI AAISKLRVGQ VYAASVMYGY FLKRVDQRFQ LEKTMKSLPW GSEEEDSALN QVMTTDSMPS ARVSSSHPEM
301: GSWTAPDFNA GGPSQSIKPS RLRSYVMSFD SDTLQRYATV RSKEAFGIIE KHTEALFGKP EIVITPEGAV DSSKDEHIRI SFSGLRRLIL EAVTFGSFLW
401: DVESFVDSRY HFVTN

Best Arabidopsis Sequence Match ( AT3G17800.1 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.