Factsheet for Bra001683.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82345	Canola	plastid	90.93	91.38
Bra022245.1-P	Field mustard	plastid	75.25	73.98
AT3G17800.2	Thale cress	plastid	75.49	72.13
Bra032255.1-P	Field mustard	plastid	63.48	63.64
Solyc03g098000.2.1	Tomato	plastid	59.56	62.95
KRH60570	Soybean	plastid	60.29	61.5
VIT_17s0119g00070.t01	Wine grape	plastid	62.75	61.1
KRH41876	Soybean	plastid	59.56	60.15
KRH39016	Soybean	plastid	60.54	59.66
KRH48705	Soybean	plastid	59.56	59.56
GSMUA_Achr1P22120_001	Banana	plastid	55.64	59.11
PGSC0003DMT400083980	Potato	plastid	60.29	58.43
KXG37708	Sorghum	plastid	58.82	57.83
HORVU4Hr1G008300.1	Barley	plastid	57.35	57.35
TraesCS4B01G050500.1	Wheat	plastid	57.35	57.21
TraesCS4D01G050700.1	Wheat	plastid	57.11	56.83
TraesCS4A01G264500.1	Wheat	plastid	57.35	56.66
GSMUA_Achr8P30820_001	Banana	mitochondrion	56.62	55.53
Zm00001d033787_P001	Maize	plastid	56.86	54.85
Zm00001d013411_P002	Maize	plastid	55.64	54.57
VIT_15s0024g00690.t01	Wine grape	plastid	53.19	52.8
Os03t0717900-01	Rice	cytosol	58.33	52.31
Bra033851.1-P	Field mustard	plastid	40.44	41.15
Bra037475.1-P	Field mustard	plastid	27.21	32.65
Bra040372.1-P	Field mustard	plastid	27.45	31.91
Bra029638.1-P	Field mustard	plastid	27.94	30.98

Protein Annotations

EnsemblPlants:Bra001683.1	EnsemblPlants:Bra001683.1-P	EnsemblPlantsGene:Bra001683	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808
PANTHER:PTHR31808:SF4	PFAM:PF05542	SEG:seg	UniParc:UPI0002540417	UniProt:M4CBV3	MapMan:35.1

Description

AT3G17800 (E=8e-176) | mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem

Coordinates

chrA03:-:17845740..17847321

Molecular Weight (calculated)

44829.3 Da

IEP (calculated)

7.374

GRAVY (calculated)

-0.301

Length

408 amino acids

Sequence
(BLAST)

001: MDAATASLIQ SPLLPHETSR NGAGSMFLTT SAPGFTPSGS KLQLRLKQNP FTRFSKPLQS STTASKTRRS FVVKASAASD DASSKPIAPL QLESPAGQFL
101: SQILVSHPHL VPAAVEQQLE QLQTDRDSQG QNTDSSSSLP GTDIVLYRRI AELKENERRR TLEEILYALV VQKFMEANVS LIPSITPSSS DPSGRVDTWP
201: TKVEKLEQLH SPEMYEMIHN HLALILGSRI GDLTSVAQTS KLRVGQVYAA SVIYGYFLKR VDQRFQLEKT MKLLPGSGGA EEKQPEDVSS HPEVGSFAGG
301: VSAKGFGSEI KPSRLRTYVM SFDSETLQRY ATIRSREAVG IIEKHTEALF GKPEIVITPQ GIVDSSNDEQ IKISFGGMKR LVLEAVTFGS FLWDVESHVD
401: ARYQFVLN

Best Arabidopsis Sequence Match ( AT3G17800.1 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.