Factsheet for TraesCS4A01G264500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G132200.1
TraesCS2B01G154700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	TraesCS2A01G132200.1	AT2G41680.1	21798944
AT1G48450.1	TraesCS2B01G154700.1	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G050500.1	Wheat	plastid	96.37	97.31
TraesCS4D01G050700.1	Wheat	plastid	95.88	96.59
HORVU4Hr1G008300.1	Barley	plastid	94.43	95.59
KXG37708	Sorghum	plastid	76.27	75.9
Zm00001d033787_P001	Maize	plastid	74.58	72.81
Zm00001d013411_P002	Maize	plastid	72.64	72.12
Os03t0717900-01	Rice	cytosol	78.93	71.65
GSMUA_Achr1P22120_001	Banana	plastid	59.56	64.06
GSMUA_Achr8P30820_001	Banana	mitochondrion	61.74	61.3
Solyc03g098000.2.1	Tomato	plastid	55.21	59.07
CDY19857	Canola	nucleus	14.77	58.65
CDX82345	Canola	plastid	57.38	58.37
AT3G17800.2	Thale cress	plastid	59.81	57.85
CDX95820	Canola	plastid	57.87	57.59
CDX92162	Canola	plastid	57.87	57.59
Bra001683.1-P	Field mustard	plastid	56.66	57.35
CDX75937	Canola	plastid	57.14	57.0
Bra022245.1-P	Field mustard	plastid	57.14	56.87
PGSC0003DMT400083980	Potato	plastid	57.63	56.53
KRH60570	Soybean	plastid	53.75	55.5
KRH48705	Soybean	plastid	54.72	55.39
KRH39016	Soybean	plastid	54.96	54.83
KRH41876	Soybean	plastid	53.51	54.7
VIT_17s0119g00070.t01	Wine grape	plastid	55.21	54.42
CDY23684	Canola	plastid	53.27	54.05
Bra032255.1-P	Field mustard	plastid	53.27	54.05
AT1G48450.1	Thale cress	plastid	53.75	52.48
CDY58279	Canola	plastid	54.0	52.47
VIT_15s0024g00690.t01	Wine grape	plastid	46.49	46.72
TraesCS1A01G390400.1	Wheat	mitochondrion	26.15	27.62

Protein Annotations

EnsemblPlants:TraesCS4A01G264500.1	EnsemblPlantsGene:TraesCS4A01G264500	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4
PFAM:PF05542	SEG:seg	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4A:-:576922793..576924952

Molecular Weight (calculated)

45453.9 Da

IEP (calculated)

8.650

GRAVY (calculated)

-0.282

Length

413 amino acids

Sequence
(BLAST)

001: MEAAAAAAVA LRSPAAAPSR RAAAPSRRAA AASSLPFERS RSFALGSIKG LGRRQLTSRR LRSVVRASSS SPSESLPSSS PIAPLQMESP VGQFLSQILV
101: THPHLLPAAA EQQLEQLQTV QDSAEKKDAQ APPAAGDIVL YRRIAEVKEK ERKRTMEEIL YALVVQKFVE AGVSLVPALS HSIDTSSGRV DQWAEHVEGK
201: LERLHSHEAY EMIENHLNLI LGQRQADGTV AAISKLRVGQ VYAASVMYGY FLKRVDKRFQ LEKSMKSLPW GSEDDALNQV MTTDSRLSDQ TYSSHPEVES
301: WTSPDLSAGG LGQSVKPSRL RSYVMSFDSD TLQTYATIRS KVAFGIIEKH TEALFGKPEI VITPEGTVDS SKDEYVRISF SGLRRLILEA VTFGSFLWDV
401: ESYVDSRYHF VTN

Best Arabidopsis Sequence Match ( AT3G17800.2 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRVC PKSLQNASAR SSRSLQSLTT TAKTRRSFVV RASSASNDAS SGSSPKPIAP
101: LQLQSPAGQF LSQILVSHPH LVPAAVEQQL EQLQTDRDSQ GQNKDSASVP GTDIVLYRRI AELKENERRR TLEEILYALV VQKFMEANVS LVPSVSPSSD
201: PSGRVDTWPT KVEKLERLHS PEMYEMIHNH LALILGSRMG DLNSVAQISK LRVGQVYAAS VMYGYFLKRV DQRFQLEKTM KILPGGSDES KTSVEQAEGT
301: ATYQAAVSSH PEVGAFAGGV SAKGFGSEIK PSRLRSYVMS FDAETLQRYA TIRSREAVGI IEKHTEALFG KPEIVITPEG TVDSSKDEQI KISFGGMKRL
401: VLEAVTFGSF LWDVESHVDA RYHFVLN

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.