Factsheet for Solyc03g098000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g016010.2.1
Solyc10g080080.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	Solyc04g016010.2.1	AT2G41680.1	21798944
AT1G48450.1	Solyc10g080080.1.1	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083980	Potato	plastid	89.38	81.95
VIT_17s0119g00070.t01	Wine grape	plastid	71.76	66.11
CDY19857	Canola	nucleus	17.1	63.46
GSMUA_Achr1P22120_001	Banana	plastid	62.95	63.28
GSMUA_Achr8P30820_001	Banana	mitochondrion	65.03	60.34
Bra022245.1-P	Field mustard	plastid	64.77	60.24
CDX95820	Canola	plastid	64.77	60.24
CDX92162	Canola	plastid	64.51	60.0
CDX75937	Canola	plastid	64.25	59.9
KRH41876	Soybean	plastid	62.69	59.9
Bra001683.1-P	Field mustard	plastid	62.95	59.56
KRH60570	Soybean	plastid	61.66	59.5
CDX82345	Canola	plastid	62.18	59.11
Bra032255.1-P	Field mustard	plastid	61.66	58.48
CDY23684	Canola	plastid	61.66	58.48
KRH48705	Soybean	plastid	61.66	58.33
KRH39016	Soybean	plastid	61.66	57.49
AT3G17800.2	Thale cress	plastid	63.21	57.14
HORVU4Hr1G008300.1	Barley	plastid	59.84	56.62
AT1G48450.1	Thale cress	plastid	61.92	56.5
CDY58279	Canola	plastid	62.18	56.47
TraesCS4D01G050700.1	Wheat	plastid	59.84	56.34
TraesCS4B01G050500.1	Wheat	plastid	59.59	56.23
KXG37708	Sorghum	plastid	59.84	55.66
TraesCS4A01G264500.1	Wheat	plastid	59.07	55.21
Zm00001d033787_P001	Maize	plastid	59.07	53.9
VIT_15s0024g00690.t01	Wine grape	plastid	56.74	53.28
Zm00001d013411_P002	Maize	plastid	56.74	52.64
Os03t0717900-01	Rice	cytosol	60.36	51.21
Solyc08g076090.2.1	Tomato	nucleus, plastid	41.71	40.05
Solyc06g007550.1.1	Tomato	cytosol	21.24	29.18
Solyc09g057580.2.1	Tomato	plastid	15.03	27.23
Solyc06g007560.1.1	Tomato	plastid	24.09	25.69

Protein Annotations

EnsemblPlants:Solyc03g098000.2.1	EnsemblPlantsGene:Solyc03g098000.2	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4
PFAM:PF05542	UniParc:UPI0002768598	UniProt:K4BJL6	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3:+:60358789..60361607

Molecular Weight (calculated)

42527.5 Da

IEP (calculated)

6.435

GRAVY (calculated)

-0.284

Length

386 amino acids

Sequence
(BLAST)

001: MSPSGIKLYP SISHVKLSNR KVAFGSRKYT AIRASVSPSE SGGSAAPIAP LQLESPIGQF LCQILTSHPH LVSAAVDQQL ELLKIDRDAE QQKEEPSIAG
101: TDIVLYRRIA EVKANERKKT LEEILYALVV QKFMDANVSL VPAISPSSSE PSGRIDTWPS QDDKLEHLHS AEANEMIQNH LSLILGSRLG DDSAVAQISK
201: LRVGQVYAAS IMYGYFLRRV DQRFQLEKSM KVLPPGVDNE DSSIQQVAGE DISGDRSDTS FRSTTQTHPE LTSWSAGGVS PGGFGQGIKP SRLRNYVMSF
301: DGETLQRYAT IRSREAIGMI EKHTEALFGR PEIVITPQGT IDSSKDELIK ISFGGLRRLV LEAVTFGSFL WDVESYVDSR YHFVAN

Best Arabidopsis Sequence Match ( AT3G17800.1 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.