CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82345	Canola	plastid	88.65	90.39
CDX92162	Canola	plastid	80.19	80.0
CDX95820	Canola	plastid	78.26	78.07
CDY19857	Canola	nucleus	19.57	77.88
AT3G17800.2	Thale cress	plastid	80.19	77.75
CDY23684	Canola	plastid	64.25	65.36
Solyc03g098000.2.1	Tomato	plastid	59.9	64.25
CDY58279	Canola	plastid	65.7	64.0
VIT_17s0119g00070.t01	Wine grape	plastid	62.8	62.05
KRH60570	Soybean	plastid	59.66	61.75
PGSC0003DMT400083980	Potato	plastid	62.08	61.05
KRH41876	Soybean	plastid	59.18	60.64
KRH48705	Soybean	plastid	58.7	59.56
GSMUA_Achr1P22120_001	Banana	plastid	55.07	59.38
KRH39016	Soybean	plastid	58.94	58.94
KXG37708	Sorghum	plastid	58.45	58.31
TraesCS4B01G050500.1	Wheat	plastid	57.0	57.7
HORVU4Hr1G008300.1	Barley	plastid	56.76	57.6
TraesCS4D01G050700.1	Wheat	plastid	56.76	57.32
TraesCS4A01G264500.1	Wheat	plastid	57.0	57.14
GSMUA_Achr8P30820_001	Banana	mitochondrion	57.0	56.73
Zm00001d033787_P001	Maize	plastid	56.76	55.56
Zm00001d013411_P002	Maize	plastid	55.56	55.29
VIT_15s0024g00690.t01	Wine grape	plastid	52.42	52.8
Os03t0717900-01	Rice	cytosol	57.49	52.31
CDY29940	Canola	plastid	39.61	40.9
CDY35549	Canola	plastid	39.13	40.3
CDX86293	Canola	plastid	27.29	33.24
CDY34905	Canola	plastid	26.57	32.16
CDX85350	Canola	plastid	26.33	32.06
CDY60823	Canola	plastid	26.57	31.25
CDY28064	Canola	plastid	27.29	30.62
CDY24630	Canola	plastid	27.29	30.13

Protein Annotations

EnsemblPlants:CDX75937	EnsemblPlantsGene:GSBRNA2T00123964001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4
PFAM:PF05542	ProteinID:CDX75937	ProteinID:CDX75937.1	SEG:seg	UniParc:UPI0004EDEE0D	MapMan:35.1

Description

BnaC03g40200D

Coordinates

chrLK031805:-:2033445..2035112

Molecular Weight (calculated)

45468.1 Da

IEP (calculated)

7.101

GRAVY (calculated)

-0.285

Length

414 amino acids

Sequence
(BLAST)

001: MDAATASLIQ SPLLPHETFR NGAGSMFLTT SGGFTPSGSK LQVRLKQNAF TRFSKPLQTS TTTASKTRRS FVVKASAASD DASSKPIAPL QLESPAGQFL
101: SQILVSHPHL VPAAVEQQLE QLQTDRDSQG QNTDSSSSVP GTDIVLYRRI AELKENERHR TLEEILYALV VQKFMEANVS LIPSITPSSS DPSGRVDTWP
201: NKVEKLEQLH SPEMYEMIHN HLALILGSRI GDLTSVAQIS KLRVGQVYAA SVMYGYFLKR VDQRFQLEKT MKLLPGSGGA DESKSSVEQP EDVTSIHPEV
301: GSFAGGVSAK GFGSEIKPSR LRTYVMSFDS ETLQRYATIR SREAVGIVEK HTEALFGKPE IVITPQGTVD SSKEEQIKIS FGGMKRLVLE AVTFGSFLWD
401: VESHVDARYQ FVLN

Best Arabidopsis Sequence Match ( AT3G17800.1 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.