CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80461
CDY05402
CDY05452
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	CDX80461	AT5G24660.1	21798944
AT3G07310.1	CDY05402	AT5G24660.1	21798944
AT3G07310.1	CDY05452	AT5G24660.1	21798944
AT3G07310.1	CDY69515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040372.1-P	Field mustard	plastid	96.49	94.02
CDY60823	Canola	plastid	95.91	93.18
CDY28064	Canola	plastid	78.66	72.9
AT3G07310.1	Thale cress	plastid	76.32	70.92
CDY24630	Canola	plastid	77.19	70.4
CDX85350	Canola	plastid	62.28	62.65
CDX86293	Canola	plastid	62.28	62.65
VIT_00s2037g00010.t01	Wine grape	cytosol	14.91	47.66
VIT_00s0360g00020.t01	Wine grape	mitochondrion	32.75	45.71
PGSC0003DMT400022517	Potato	mitochondrion	32.75	44.98
Solyc09g057580.2.1	Tomato	plastid	27.49	44.13
PGSC0003DMT400053202	Potato	cytosol	36.26	42.91
KRG99623	Soybean	plastid	45.91	42.2
PGSC0003DMT400022519	Potato	plastid	47.95	42.05
PGSC0003DMT400084936	Potato	cytosol	36.26	41.47
KRH46625	Soybean	plastid	45.91	41.42
KRH07429	Soybean	plastid	46.2	40.72
Solyc06g007550.1.1	Tomato	cytosol	33.04	40.21
KRH66142	Soybean	plastid	44.74	38.93
Solyc06g007560.1.1	Tomato	plastid	39.77	37.57
Zm00001d049232_P002	Maize	mitochondrion	39.47	34.62
TraesCS1B01G418600.1	Wheat	mitochondrion	39.47	34.53
TraesCS1A01G390400.1	Wheat	mitochondrion	39.18	34.27
Os11t0456100-01	Rice	mitochondrion	38.6	34.2
TraesCS1D01G398600.1	Wheat	mitochondrion	38.89	34.02
HORVU1Hr1G086110.1	Barley	plastid	39.77	32.54
CDX92162	Canola	plastid	33.92	27.95
CDX82345	Canola	plastid	32.46	27.34
CDY23684	Canola	plastid	32.46	27.27
CDX95820	Canola	plastid	32.75	26.99
CDX75937	Canola	plastid	32.16	26.57
CDY58279	Canola	plastid	32.16	25.88
CDY29940	Canola	plastid	29.53	25.19
CDY35549	Canola	plastid	28.36	24.13
CDY19857	Canola	nucleus	6.43	21.15

Protein Annotations

EnsemblPlants:CDY34905	EnsemblPlantsGene:GSBRNA2T00057477001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF2
PFAM:PF05542	ProteinID:CDY34905	ProteinID:CDY34905.1	UniParc:UPI0004EF2878	UniProt:A0A078H8U5	MapMan:35.1

Description

BnaA01g32360DBnaA01g32360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8U5]

Coordinates

chrLK032343:+:24961..26365

Molecular Weight (calculated)

38986.1 Da

IEP (calculated)

8.883

GRAVY (calculated)

-0.299

Length

342 amino acids

Sequence
(BLAST)

001: MDSCLSNQAS LSFLSTRSRR QRGDRSGFVL PEMRKVQYRP MVMVATAGQN SYWPGSSLNA PLKPRTSQGR FLIRLLLNKR HLFHYAAADE LRLLADNREA
101: ALARMSLSSG SDEASLHRSR IAQLMERYCK TAVQDIMYML ILYKYSEIGV SLAPKLSRCI HNGRLETWPK KDRELESIHS CDALELIKEH VNAVIGLRVN
201: SCLNEKTQIQ KLHLTKVYVA SILCGYFLKS ASLRHQLECS LPDLHGSGYE HLRHYITGFD PETMQRCAKP RTVEARSLIK KQCLALFGME DSDETILTSY
301: LSLKRLVLEA VAFGTFLWDT ELYVDGAYKL TENAEEQENR SI

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.