Factsheet for VIT_00s0360g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1
plasma membrane 1
plastid 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2037g00010.t01	Wine grape	cytosol	37.96	86.92
PGSC0003DMT400022517	Potato	mitochondrion	60.0	59.04
PGSC0003DMT400053202	Potato	cytosol	46.12	39.1
KRH07429	Soybean	plastid	60.0	37.89
PGSC0003DMT400022519	Potato	plastid	60.0	37.69
KRH46625	Soybean	plastid	57.96	37.47
KRH66142	Soybean	plastid	59.18	36.9
KRG99623	Soybean	plastid	55.51	36.56
Bra037475.1-P	Field mustard	plastid	50.61	36.47
CDX86293	Canola	plastid	50.61	36.47
CDX85350	Canola	plastid	49.8	35.88
AT3G07310.1	Thale cress	plastid	53.88	35.87
AT5G48590.1	Thale cress	plastid	48.98	34.88
CDY28064	Canola	plastid	52.24	34.69
Bra029638.1-P	Field mustard	plastid	51.84	34.51
PGSC0003DMT400084936	Potato	cytosol	41.22	33.78
CDY24630	Canola	plastid	51.43	33.6
Solyc06g007550.1.1	Tomato	cytosol	37.96	33.1
CDY34905	Canola	plastid	45.71	32.75
Bra040372.1-P	Field mustard	plastid	45.71	31.91
CDY60823	Canola	plastid	45.71	31.82
Solyc06g007560.1.1	Tomato	plastid	44.08	29.83
TraesCS1B01G418600.1	Wheat	mitochondrion	44.9	28.13
Zm00001d049232_P002	Maize	mitochondrion	44.49	27.95
TraesCS1A01G390400.1	Wheat	mitochondrion	44.49	27.88
Os11t0456100-01	Rice	mitochondrion	43.67	27.72
TraesCS1D01G398600.1	Wheat	mitochondrion	44.08	27.62
HORVU1Hr1G086110.1	Barley	plastid	44.08	25.84
Solyc09g057580.2.1	Tomato	plastid	20.0	23.0
VIT_02s0012g02240.t01	Wine grape	plastid	37.55	22.83
VIT_17s0119g00070.t01	Wine grape	plastid	35.92	21.0
VIT_15s0024g00690.t01	Wine grape	plastid	32.24	19.22

Protein Annotations

EntrezGene:100251038	wikigene:100251038	MapMan:35.1	InterPro:At3g17800-like	ProteinID:CCB45362	ProteinID:CCB45362.1
ProteinID:CCB62890	ProteinID:CCB62890.1	InterPro:DUF760	UniProt:F6I7H2	EMBL:FN595116	EMBL:FN596787
EntrezGene:LOC100251038	wikigene:LOC100251038	PFAM:PF05542	PANTHER:PTHR31808	PANTHER:PTHR31808:SF2	UniParc:UPI000210ABEB
ArrayExpress:VIT_00s0360g00020	EnsemblPlantsGene:VIT_00s0360g00020	EnsemblPlants:VIT_00s0360g00020.t01	unigene:Vvi.225	RefSeq:XP_002272171	RefSeq:XP_002272171.1

Description

No Description!

Coordinates

chrUn:+:25528206..25529188

Molecular Weight (calculated)

28201.8 Da

IEP (calculated)

6.995

GRAVY (calculated)

-0.244

Length

245 amino acids

Sequence
(BLAST)

001: MYLLIFYKFS EIRVHLVPRL SRCIYNGRLE IWPARDWALE CIHNFEVLEM IKEHLTTVLG WKPKSNVTEN WATTQIRRFQ LGQIYAASIL YGYFLKSASL
101: RHHLEMSLVH SHHDLPSSNV SGFWSYGLKD LFLGPNCSSQ PTSLGEASSR QEEKEEKKLR CYVMGFDPDT LQRCAKLKSK EAVNLVEKHS CALFGDEKTG
201: LLETDDVIST SFSSMKRLVL EAVAFGSFLW DTEEYVGSVY NLKEN

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.