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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra037475.1-P Field mustard plastid 79.94 80.88
CDX86293 Canola plastid 79.94 80.88
CDX85350 Canola plastid 79.07 80.0
AT3G07310.1 Thale cress plastid 69.19 64.67
VIT_00s0360g00020.t01 Wine grape mitochondrion 34.88 48.98
VIT_00s2037g00010.t01 Wine grape cytosol 15.12 48.6
PGSC0003DMT400022517 Potato mitochondrion 33.14 45.78
KRG99623 Soybean plastid 48.84 45.16
Solyc09g057580.2.1 Tomato plastid 27.62 44.6
KRH46625 Soybean plastid 49.13 44.59
KRH07429 Soybean plastid 48.84 43.3
PGSC0003DMT400022519 Potato plastid 48.55 42.82
PGSC0003DMT400053202 Potato cytosol 35.17 41.87
PGSC0003DMT400084936 Potato cytosol 36.34 41.81
KRH66142 Soybean plastid 47.67 41.73
Solyc06g007550.1.1 Tomato cytosol 32.85 40.21
Solyc06g007560.1.1 Tomato plastid 38.37 36.46
Os11t0456100-01 Rice mitochondrion 40.12 35.75
Zm00001d049232_P002 Maize mitochondrion 40.12 35.38
TraesCS1A01G390400.1 Wheat mitochondrion 36.92 32.48
TraesCS1B01G418600.1 Wheat mitochondrion 36.92 32.48
TraesCS1D01G398600.1 Wheat mitochondrion 36.92 32.48
HORVU1Hr1G086110.1 Barley plastid 38.08 31.34
AT1G48450.1 Thale cress plastid 33.14 26.95
AT3G17800.2 Thale cress plastid 33.43 26.93
AT1G32160.1 Thale cress nucleus, plastid 28.2 23.89
Protein Annotations
MapMan:35.1EntrezGene:834916UniProt:A0A178UBS6ProteinID:AED95692.1ArrayExpress:AT5G48590EnsemblPlantsGene:AT5G48590
RefSeq:AT5G48590TAIR:AT5G48590RefSeq:AT5G48590-TAIR-GEnsemblPlants:AT5G48590.1TAIR:AT5G48590.1InterPro:At3g17800-like
ProteinID:BAB10692.1EMBL:BT003872EMBL:BT005499InterPro:DUF760GO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008483GO:GO:0016740RefSeq:NP_199670.1ProteinID:OAO91296.1PFAM:PF05542
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078
PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281
PANTHER:PTHR31808PANTHER:PTHR31808:SF2UniProt:Q9FJL1UniParc:UPI000000C1B4SEG:seg:
Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FJL1]
Coordinates
chr5:+:19698280..19699992
Molecular Weight (calculated)
38961.5 Da
IEP (calculated)
7.890
GRAVY (calculated)
-0.303
Length
344 amino acids
Sequence
(BLAST)
001: MDTSLSHHGS LPFPPSRRNF VKQNRGGDCV FLPSRRKFRY DSLVVVSAAS SGQSIDAPLV PRSPQGRFLS SVLVKKRQLF HFAVADLLKQ LADDKEASLS
101: RMFLSYGSDE ASLHRRIAQL KESDCQIAIE DIMYMLILYK FSEIRVPLVP KLPSCIYNGR LEISPSKDWE LESIHSFDVL ELIKEHSNAV ISLRVNSSLT
201: DDCATTEIDK NRLSKVYTAS VLYGYFLKSA SLRHQLECSL SQHHGSFTKQ LRHYISEFDP KILRRCAKPR SHEAKSLIEK QSLALFGPEE SSKESIVTSF
301: SSLKRLLLEA VAFGTFLWDT EEYVDGAFKL KENENAEEET NSSV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.