CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037475.1-P	Field mustard	plastid	100.0	100.0
CDX85350	Canola	plastid	96.18	96.18
AT5G48590.1	Thale cress	plastid	80.88	79.94
CDY28064	Canola	plastid	68.24	62.87
CDY34905	Canola	plastid	62.65	62.28
CDY60823	Canola	plastid	63.82	61.65
CDY24630	Canola	plastid	67.06	60.8
VIT_00s2037g00010.t01	Wine grape	cytosol	16.47	52.34
VIT_00s0360g00020.t01	Wine grape	mitochondrion	36.47	50.61
PGSC0003DMT400022517	Potato	mitochondrion	34.12	46.59
KRG99623	Soybean	plastid	49.41	45.16
KRH46625	Soybean	plastid	49.71	44.59
Solyc09g057580.2.1	Tomato	plastid	27.35	43.66
KRH07429	Soybean	plastid	49.41	43.3
PGSC0003DMT400053202	Potato	cytosol	36.47	42.91
PGSC0003DMT400022519	Potato	plastid	48.82	42.56
KRH66142	Soybean	plastid	48.24	41.73
PGSC0003DMT400084936	Potato	cytosol	36.18	41.14
Solyc06g007550.1.1	Tomato	cytosol	32.65	39.5
Zm00001d049232_P002	Maize	mitochondrion	42.94	37.44
Os11t0456100-01	Rice	mitochondrion	41.76	36.79
Solyc06g007560.1.1	Tomato	plastid	38.24	35.91
TraesCS1D01G398600.1	Wheat	mitochondrion	40.29	35.04
TraesCS1A01G390400.1	Wheat	mitochondrion	40.0	34.78
TraesCS1B01G418600.1	Wheat	mitochondrion	40.0	34.78
HORVU1Hr1G086110.1	Barley	plastid	40.88	33.25
CDY23684	Canola	plastid	33.82	28.26
CDX82345	Canola	plastid	33.24	27.83
CDX95820	Canola	plastid	33.82	27.71
CDX92162	Canola	plastid	33.82	27.71
CDX75937	Canola	plastid	33.24	27.29
CDY58279	Canola	plastid	33.82	27.06
CDY29940	Canola	plastid	29.41	24.94
CDY35549	Canola	plastid	28.53	24.13
CDY19857	Canola	nucleus	6.76	22.12

Protein Annotations

EnsemblPlants:CDX86293	EnsemblPlantsGene:GSBRNA2T00144405001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF2
PFAM:PF05542	ProteinID:CDX86293	ProteinID:CDX86293.1	SEG:seg	UniParc:UPI000253F92C	MapMan:35.1

Description

BnaA06g30100D

Coordinates

chrLK031845:-:795674..797579

Molecular Weight (calculated)

38331.1 Da

IEP (calculated)

7.252

GRAVY (calculated)

-0.215

Length

340 amino acids

Sequence
(BLAST)

001: MDTSLSHQGS LSFLPSRRDS PRRITGGVCA LLPWRRKVRY DSMVVVAAAG AGASIDAPLV PRSAQGKFLS CVLMKKRPLF HFAVADLLKQ LAEDKEAALS
101: RMFLSSGSDE ASLHRRIAQL KESNCQTAIE DIMYMLILYK FSEIRVPLVP KLSTCIYNGK LEVWPSKDWE LESIHSRDVL ELIKEHSNAV ISLRVDSTLT
201: DDLETTEIDK HHLSRVYTAS ILYGYFLKSA SLRHQLECSL SEGITKQLRH YISGFDPKIL QRCAKPRSRE AKNLIEKQSL ALFGPEEKEE ESVIVTSFSS
301: LKRLLLEAVA FGSFLWDTEE YVDGAFKLKE NENAEENSSV

Best Arabidopsis Sequence Match ( AT5G48590.1 )
(BLAST)

001: MDTSLSHHGS LPFPPSRRNF VKQNRGGDCV FLPSRRKFRY DSLVVVSAAS SGQSIDAPLV PRSPQGRFLS SVLVKKRQLF HFAVADLLKQ LADDKEASLS
101: RMFLSYGSDE ASLHRRIAQL KESDCQIAIE DIMYMLILYK FSEIRVPLVP KLPSCIYNGR LEISPSKDWE LESIHSFDVL ELIKEHSNAV ISLRVNSSLT
201: DDCATTEIDK NRLSKVYTAS VLYGYFLKSA SLRHQLECSL SQHHGSFTKQ LRHYISEFDP KILRRCAKPR SHEAKSLIEK QSLALFGPEE SSKESIVTSF
301: SSLKRLLLEA VAFGTFLWDT EEYVDGAFKL KENENAEEET NSSV

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FJL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.