CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	KRH16959	AT5G24660.1	21798944
AT3G07310.1	KRH53667	AT5G24660.1	21798944
AT3G07310.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99623	Soybean	plastid	88.39	90.05
KRH07429	Soybean	plastid	65.17	63.66
KRH66142	Soybean	plastid	64.38	62.09
VIT_00s0360g00020.t01	Wine grape	mitochondrion	37.47	57.96
VIT_00s2037g00010.t01	Wine grape	cytosol	15.83	56.07
Bra037475.1-P	Field mustard	plastid	44.59	49.71
CDX86293	Canola	plastid	44.59	49.71
CDX85350	Canola	plastid	44.33	49.41
AT5G48590.1	Thale cress	plastid	44.59	49.13
AT3G07310.1	Thale cress	plastid	47.23	48.64
PGSC0003DMT400022517	Potato	mitochondrion	31.13	47.39
CDY28064	Canola	plastid	45.91	47.15
Bra029638.1-P	Field mustard	plastid	45.12	46.47
CDY34905	Canola	plastid	41.42	45.91
Bra040372.1-P	Field mustard	plastid	42.22	45.58
CDY24630	Canola	plastid	44.85	45.33
CDY60823	Canola	plastid	41.42	44.6
PGSC0003DMT400022519	Potato	plastid	43.8	42.56
PGSC0003DMT400053202	Potato	cytosol	32.45	42.56
Solyc09g057580.2.1	Tomato	plastid	23.22	41.31
PGSC0003DMT400084936	Potato	cytosol	32.45	41.14
Solyc06g007550.1.1	Tomato	cytosol	29.29	39.5
TraesCS1A01G390400.1	Wheat	mitochondrion	37.47	36.32
TraesCS1B01G418600.1	Wheat	mitochondrion	37.47	36.32
Os11t0456100-01	Rice	mitochondrion	36.94	36.27
Solyc06g007560.1.1	Tomato	plastid	34.56	36.19
TraesCS1D01G398600.1	Wheat	mitochondrion	36.68	35.55
Zm00001d049232_P002	Maize	mitochondrion	36.41	35.38
HORVU1Hr1G086110.1	Barley	plastid	38.26	34.69
KRH48705	Soybean	plastid	28.76	26.72
KRH39016	Soybean	plastid	28.5	26.09
KRH39607	Soybean	golgi	27.97	25.98
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.7	25.86
KRH60570	Soybean	plastid	27.18	25.75
KRH41876	Soybean	plastid	27.44	25.74

Protein Annotations

EMBL:ACUP02005352	EnsemblPlants:KRH46625	EnsemblPlantsGene:GLYMA_08G346900	EntrezGene:102662413	InterPro:At3g17800-like	InterPro:DUF760
PANTHER:PTHR31808	PANTHER:PTHR31808:SF2	PFAM:PF05542	ProteinID:KRH46625	ProteinID:KRH46625.1	SEG:seg
UniParc:UPI00023CAA7B	UniProt:I1KZ23	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:46160980..46165739

Molecular Weight (calculated)

43551.3 Da

IEP (calculated)

7.989

GRAVY (calculated)

-0.323

Length

379 amino acids

Sequence
(BLAST)

001: MENCVFHHHH HHLRSMITLP QPSSLKPNLR VCPKVMRVRA SAGRRHCEFS SQNAPLEPRS LAGKFLSGVL QNRRQLFHVL AKEELKMLSD DRDSAIARMR
101: LSHHSDEALL HRRIAQVKEN ESMIAIEDVM YLLILYKFSE IRVHLVPKLS SCIYNGRLEI LPSKDWDLES IHSMEVLDII RKHVSTVTGL RSNPSVRESW
201: ETTPIRQFWL ARVYVASILY GYFLKSVSLR YNLERSLSLS DHDLHHGHKT GPSFQDMYRS GPKDVMLGNK SDIRSVWHGL IGQEEEIEDL TCYVTGFHPG
301: SFERCAKLRS KEAVHLVESH SNALFGDGKS GLSQHDDVIV TSFSSLRRLV LEAVAFGSFL WETEDYIDNV YKLKDQVVE

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.