CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80461
CDY05402
CDY05452
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	CDX80461	AT5G24660.1	21798944
AT3G07310.1	CDY05402	AT5G24660.1	21798944
AT3G07310.1	CDY05452	AT5G24660.1	21798944
AT3G07310.1	CDY69515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24630	Canola	plastid	95.12	93.6
AT3G07310.1	Thale cress	plastid	84.28	84.51
CDY34905	Canola	plastid	72.9	78.66
CDY60823	Canola	plastid	73.17	76.7
CDX86293	Canola	plastid	62.87	68.24
CDX85350	Canola	plastid	61.25	66.47
VIT_00s0360g00020.t01	Wine grape	mitochondrion	34.69	52.24
VIT_00s2037g00010.t01	Wine grape	cytosol	14.63	50.47
PGSC0003DMT400022517	Potato	mitochondrion	33.06	49.0
Solyc09g057580.2.1	Tomato	plastid	27.1	46.95
KRG99623	Soybean	plastid	47.15	46.77
KRH46625	Soybean	plastid	47.15	45.91
PGSC0003DMT400022519	Potato	plastid	48.24	45.64
KRH07429	Soybean	plastid	47.15	44.85
PGSC0003DMT400053202	Potato	cytosol	34.15	43.6
KRH66142	Soybean	plastid	46.34	43.51
PGSC0003DMT400084936	Potato	cytosol	34.42	42.47
Solyc06g007550.1.1	Tomato	cytosol	30.89	40.57
Os11t0456100-01	Rice	mitochondrion	39.84	38.08
Solyc06g007560.1.1	Tomato	plastid	36.86	37.57
TraesCS1A01G390400.1	Wheat	mitochondrion	38.75	36.57
TraesCS1B01G418600.1	Wheat	mitochondrion	38.75	36.57
Zm00001d049232_P002	Maize	mitochondrion	38.48	36.41
TraesCS1D01G398600.1	Wheat	mitochondrion	38.48	36.32
HORVU1Hr1G086110.1	Barley	plastid	39.3	34.69
CDY23684	Canola	plastid	32.25	29.24
CDX92162	Canola	plastid	32.25	28.67
CDX82345	Canola	plastid	31.17	28.33
CDX95820	Canola	plastid	31.44	27.95
CDY58279	Canola	plastid	31.98	27.76
CDY29940	Canola	plastid	29.81	27.43
CDX75937	Canola	plastid	30.62	27.29
CDY35549	Canola	plastid	29.0	26.62
CDY19857	Canola	nucleus	6.23	22.12

Protein Annotations

EnsemblPlants:CDY28064	EnsemblPlantsGene:GSBRNA2T00039006001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF2
PFAM:PF05542	ProteinID:CDY28064	ProteinID:CDY28064.1	UniParc:UPI0004EDC671	UniProt:A0A078GSC6	MapMan:35.1

Description

BnaC05g44660DBnaC05g44660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSC6]

Coordinates

chrLK032213:+:450225..452513

Molecular Weight (calculated)

41470.5 Da

IEP (calculated)

8.199

GRAVY (calculated)

-0.297

Length

369 amino acids

Sequence
(BLAST)

001: MDTCLSNQAA LSFLPSRLRR QSGDGGGGVF SLPSMRKVQY RSMVVVATAG QSRCEPGSSL NAPLELRSAQ GRFLRSVLLN KRQLFHYAAA DELKQLADER
101: EAALARMALS SGSDEASLHR RIAHLKERYC KTAVQDIMYM LIFYKYSEIR VPLAPKLSRC IYNGRLEIWP TKDWELESIH TCDALELIKE HVSAVIGLRV
201: NACVTDNWAT TQIQKLHLRN VYDASILYGY FLKSASLRHQ LECSLSDLHG SGYLKGPVFG SSFTTGTSQI SSAKEQLRHY ITGFDAETLR RCARPRTEEA
301: RNLIEKQSLA LFGAEESDET IVTSYSSLKR LVLEAVAFGT FLWDTELYVD GTYKLKENGN AEEQENRSI

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.