CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033851.1-P	Field mustard	plastid	99.25	99.5
CDY29940	Canola	plastid	97.76	98.0
AT1G32160.1	Thale cress	nucleus, plastid	80.35	79.56
VIT_02s0012g02240.t01	Wine grape	plastid	57.21	57.07
GSMUA_Achr8P14670_001	Banana	cytosol	45.77	56.27
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.73	54.19
Solyc08g076090.2.1	Tomato	nucleus, plastid	53.73	53.73
KRH39607	Soybean	golgi	53.73	52.94
PGSC0003DMT400024037	Potato	plastid	51.74	51.74
Os04t0596300-01	Rice	plastid	45.77	45.43
TraesCS2D01G443500.1	Wheat	plastid	44.28	45.41
Zm00001d026211_P001	Maize	plastid	46.52	45.06
EES12774	Sorghum	plastid	44.78	44.78
CDX82345	Canola	plastid	41.54	41.13
CDX95820	Canola	plastid	40.8	39.52
CDY23684	Canola	plastid	39.8	39.31
CDX92162	Canola	plastid	40.55	39.28
CDX75937	Canola	plastid	40.3	39.13
CDY58279	Canola	plastid	40.05	37.88
HORVU2Hr1G102880.1	Barley	cytosol, nucleus, plastid	44.53	36.23
CDY19857	Canola	nucleus	9.2	35.58
CDY28064	Canola	plastid	26.62	29.0
CDX86293	Canola	plastid	24.13	28.53
CDY34905	Canola	plastid	24.13	28.36
CDY24630	Canola	plastid	26.12	28.0
CDX85350	Canola	plastid	23.63	27.94
CDY60823	Canola	plastid	24.13	27.56

Protein Annotations

EnsemblPlants:CDY35549	EnsemblPlantsGene:GSBRNA2T00058610001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF6
PFAM:PF05542	ProteinID:CDY35549	ProteinID:CDY35549.1	SEG:seg	UniParc:UPI0003E609FB	UniProt:A0A078HDR6
MapMan:35.1	:	:	:	:	:

Description

BnaA05g16370DBnaA05g16370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDR6]

Coordinates

chrLK032354:+:207220..208811

Molecular Weight (calculated)

45528.1 Da

IEP (calculated)

5.507

GRAVY (calculated)

-0.461

Length

402 amino acids

Sequence
(BLAST)

001: MQAIGSYGCL CFKHYHSLSK FLSPPSTSPS LLPQRCHSFC IPKLGSSSNN AENGRGRGVT VRASGEDDNF APIAPVELES PVGQLLDQIL RTHPHLLPVT
101: VDQQLDKLST ENDNLKAEPS SSQDILSKRI SEVKDKEKRK TLAEIIYCLV VHRFVEKEIT MIPQIKPTSD PAGRIDLWPN QEEKLEVIHS AEAFEMIQSH
201: LSSVLGDRTA VGPLSSIVQI SKIKLGKLYA ASVMYGYFLR RIDQRYQLER TMNTLPKRPD KTRERYEEPS PPYPLWDPDS LIRIQPEEYD PDEYAIQRNE
301: EESSSSYGLR SYVTYLDSDT LQRYATIRSK EAMSLIEKQT QALFGRPDIR ILEDGKLDTS NDEVLSLSFS GLAMLVLEAV TFGSFLWDAE SYVESKYHFL
401: KA

Best Arabidopsis Sequence Match ( AT1G32160.1 )
(BLAST)

001: MQAIGSSHGR RLCFNHYLSD SFSKFLSPSS SPSLLPQRCH SFCIPKLGSS STNENGRGRS VTVRASGDED SNENFAPLAP VELESPVGQL LEQILRTHPH
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA

Arabidopsis Description

At1g32160/F3C3_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVR1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.