CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 5
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.18	91.63
VIT_02s0012g02240.t01	Wine grape	plastid	62.75	63.52
GSMUA_Achr8P14670_001	Banana	cytosol	47.3	59.02
Solyc08g076090.2.1	Tomato	nucleus, plastid	55.64	56.47
PGSC0003DMT400024037	Potato	plastid	55.64	56.47
CDY29940	Canola	plastid	53.43	54.36
Bra033851.1-P	Field mustard	plastid	53.19	54.11
CDY35549	Canola	plastid	52.94	53.73
AT1G32160.1	Thale cress	nucleus, plastid	52.94	53.2
Os04t0596300-01	Rice	plastid	48.28	48.64
TraesCS2D01G443500.1	Wheat	plastid	45.59	47.45
EES12774	Sorghum	plastid	45.34	46.02
Zm00001d026211_P001	Maize	plastid	46.32	45.54
KRH41876	Soybean	plastid	42.4	42.82
KRH60570	Soybean	plastid	41.67	42.5
KRH39016	Soybean	plastid	42.65	42.03
KRH48705	Soybean	plastid	41.91	41.91
HORVU2Hr1G102880.1	Barley	cytosol, nucleus, plastid	45.83	37.85
KRG99623	Soybean	plastid	26.23	28.76
KRH07429	Soybean	plastid	27.21	28.61
KRH66142	Soybean	plastid	27.45	28.5
KRH46625	Soybean	plastid	25.98	27.97

Protein Annotations

EMBL:ACUP02005946	EnsemblPlants:KRH39607	EnsemblPlantsGene:GLYMA_09G209200	EntrezGene:100802337	InterPro:At3g17800-like	InterPro:DUF760
PANTHER:PTHR31808	PANTHER:PTHR31808:SF6	PFAM:PF05542	ProteinID:KRH39607	ProteinID:KRH39607.1	ProteinID:KRH39608.1
UniParc:UPI0002337D22	UniProt:I1L520	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:43361343..43365187

Molecular Weight (calculated)

46052.9 Da

IEP (calculated)

4.944

GRAVY (calculated)

-0.290

Length

408 amino acids

Sequence
(BLAST)

001: MLVSGAISDV LVVLPPSTSL RLPEFRHLHV FAVSDAKGFV SGGFLKSCPS SYNPKHYHEL YNFRARGLVA RASADSRDNL VPFAPLQLES PVGQLLEKIS
101: NTHPHLLTAV IDQQLENLQN VRDAQKESDP SQDSLYKRIA EVKDKEKRIT LEEIIYCSIV HKFLENNISM IPKISATSDP TGRVDLWPNQ ELKLEAVHSP
201: EALEMIQSHL SLVLGDRLVG PLQTVVQISK IKLGKLYAAS IMYGYFLKRV DERFQLERSM GILPKDFGKA KSYDEPSPGI KLWDPDSLIT VQDYDDEGYN
301: DSDYMDTDED KSFRLRAYVM QLDAETLQRL ATVRSKEAIS LIEKQTQALF GRPDIRVSDD GSIETSNDEL LSLTFSGLTM LVLEAIAFGS FLWDKENYVE
401: SKYPFLNE

Best Arabidopsis Sequence Match ( AT1G32160.1 )
(BLAST)

001: MQAIGSSHGR RLCFNHYLSD SFSKFLSPSS SPSLLPQRCH SFCIPKLGSS STNENGRGRS VTVRASGDED SNENFAPLAP VELESPVGQL LEQILRTHPH
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA

Arabidopsis Description

At1g32160/F3C3_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVR1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.