Factsheet for VIT_02s0012g02240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P14670_001	Banana	cytosol	54.34	66.97
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.51	65.02
KRH39607	Soybean	golgi	63.52	62.75
Solyc08g076090.2.1	Tomato	nucleus, plastid	60.79	60.95
PGSC0003DMT400024037	Potato	plastid	60.55	60.7
Bra033851.1-P	Field mustard	plastid	57.32	57.61
CDY35549	Canola	plastid	57.07	57.21
CDY29940	Canola	plastid	56.82	57.11
AT1G32160.1	Thale cress	nucleus, plastid	57.07	56.65
Os04t0596300-01	Rice	plastid	51.12	50.86
TraesCS2D01G443500.1	Wheat	plastid	49.13	50.51
EES12774	Sorghum	plastid	49.38	49.5
Zm00001d026211_P001	Maize	plastid	49.13	47.71
VIT_00s2037g00010.t01	Wine grape	cytosol	12.16	45.79
VIT_17s0119g00070.t01	Wine grape	plastid	46.65	44.87
VIT_15s0024g00690.t01	Wine grape	plastid	42.43	41.61
HORVU2Hr1G102880.1	Barley	cytosol, nucleus, plastid	48.39	39.47
VIT_00s0360g00020.t01	Wine grape	mitochondrion	22.83	37.55

Protein Annotations

EntrezGene:100260823	wikigene:100260823	MapMan:35.1	EMBL:AM424212	InterPro:At3g17800-like	ProteinID:CAN68920
ProteinID:CAN68920.1	ProteinID:CCB57851	ProteinID:CCB57851.1	InterPro:DUF760	UniProt:F6HT41	EMBL:FN596247
EntrezGene:LOC100260823	wikigene:LOC100260823	PFAM:PF05542	PANTHER:PTHR31808	PANTHER:PTHR31808:SF6	UniParc:UPI0001982D8E
ArrayExpress:VIT_02s0012g02240	EnsemblPlantsGene:VIT_02s0012g02240	EnsemblPlants:VIT_02s0012g02240.t01	unigene:Vvi.2205	RefSeq:XP_002276652	RefSeq:XP_002276652.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:9124761..9137033

Molecular Weight (calculated)

45377.2 Da

IEP (calculated)

5.008

GRAVY (calculated)

-0.252

Length

403 amino acids

Sequence
(BLAST)

001: MQVSGVDVFL GFPSNGGLRS PEFRHSHTFS AGTFKNLLFR SCPSFCIPKL GVGLDKCRVR GLTVRASVNS DDELVPVAPL QLESPIGQLL AQILQTHPHL
101: LPAAIDQQLE NLQTDRDAQR EETPPSSHDL LLYRRIAAVR EKERQKVLEE ILYCLIVQKF VDKNISMIPK ISATSDPVGR VDFWPNQEQK LESIHSPEAF
201: EMIQSHLSLV LGERLVGPLD TIVQISKIKL GKLYAASIMY GYFLKRVDER YQLERTMKTL PEGFNENRLS FEDPGPANRL WDPDSLIRIP ADDDDDGGML
301: DSVEGGSYRL RSYVMYLDAE TLQRYATIRS KEAISLIEKQ TQALFGKPDV RVSEDGSLDT SNDEVVSITF SGLTMLVLEA VAFGSFLWDS ETYVESKYHF
401: LKS

Best Arabidopsis Sequence Match ( AT1G32160.1 )
(BLAST)

001: MQAIGSSHGR RLCFNHYLSD SFSKFLSPSS SPSLLPQRCH SFCIPKLGSS STNENGRGRS VTVRASGDED SNENFAPLAP VELESPVGQL LEQILRTHPH
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA

Arabidopsis Description

At1g32160/F3C3_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVR1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.