Factsheet for Os04t0596300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12774	Sorghum	plastid	77.53	78.11
Zm00001d026211_P001	Maize	plastid	77.53	75.66
TraesCS2D01G443500.1	Wheat	plastid	72.84	75.26
HORVU2Hr1G102880.1	Barley	cytosol, nucleus, plastid	71.11	58.3
GSMUA_Achr8P14670_001	Banana	cytosol	45.68	56.57
VIT_02s0012g02240.t01	Wine grape	plastid	50.86	51.12
PGSC0003DMT400024037	Potato	plastid	48.15	48.51
Solyc08g076090.2.1	Tomato	nucleus, plastid	48.15	48.51
KRH39607	Soybean	golgi	48.64	48.28
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.4	48.28
Bra033851.1-P	Field mustard	plastid	45.43	45.89
CDY29940	Canola	plastid	45.43	45.89
CDY35549	Canola	plastid	45.43	45.77
AT1G32160.1	Thale cress	nucleus, plastid	45.19	45.07
Os03t0717900-01	Rice	cytosol	40.25	35.82
Os11t0456100-01	Rice	mitochondrion	27.65	29.02

Protein Annotations

MapMan:35.1	EntrezGene:4336846	EMBL:AK067781	InterPro:At3g17800-like	ProteinID:BAF15645.1	ProteinID:BAS90789.1
ProteinID:CAE03929.1	InterPro:DUF760	ProteinID:EAZ31841.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	EnsemblPlantsGene:Os04g0596300	EnsemblPlants:Os04t0596300-01
PFAM:PF05542	PANTHER:PTHR31808	PANTHER:PTHR31808:SF6	UniProt:Q0JAJ2	UniParc:UPI00001B1E51	RefSeq:XP_015636391.1
SEG:seg	:	:	:	:	:

Description

Protein of unknown function DUF760 family protein. (Os04t0596300-01);Similar to predicted protein. (Os04t0596300-02)

Coordinates

chr4:-:30077624..30080383

Molecular Weight (calculated)

45309.1 Da

IEP (calculated)

5.506

GRAVY (calculated)

-0.331

Length

405 amino acids

Sequence
(BLAST)

001: MAAWADAALL RASSSPASAT AAASSSSSSC CLARPRASLE SRLHRRKSFL YTSSPKSGFL INSCRARSLK VKAKMDSGDG LTRLAPLMFE TPSGQLLVQI
101: LQSHPHLLPA TVDQQLENLQ SEKDAQEKEA SKVPQDLLYK RIAEVKEKER QNTLEEIIYC WIIYKFMEND ISMTPALAPL GGPVRDISSL PNQEDRLQSI
201: HSPDALEMIQ NHLNLIMGEK VAAPLDTVVE ISNLNLGKLY AASIMYGYFL KRVDERFQLE KNMKTLPPNP KQQIVLENLK PNPFWDMESL VQITPDGEEI
301: DLDDEESNPN KLRSYVSRLD ADTLQRYATI RSKEAVSLIE KQTQALFGRP DIKVLDDGSV NAKDGQMITI TFIELTHLVL EAAAFGSFLW EAESHVESKY
401: HFVNS

Best Arabidopsis Sequence Match ( AT1G32160.1 )
(BLAST)

001: MQAIGSSHGR RLCFNHYLSD SFSKFLSPSS SPSLLPQRCH SFCIPKLGSS STNENGRGRS VTVRASGDED SNENFAPLAP VELESPVGQL LEQILRTHPH
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA

Arabidopsis Description

At1g32160/F3C3_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVR1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.