Factsheet for PGSC0003DMT400024037

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076090.2.1	Tomato	nucleus, plastid	87.81	87.81
VIT_02s0012g02240.t01	Wine grape	plastid	60.7	60.55
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.21	56.65
GSMUA_Achr8P14670_001	Banana	cytosol	45.77	56.27
KRH39607	Soybean	golgi	56.47	55.64
AT1G32160.1	Thale cress	nucleus, plastid	53.98	53.45
Bra033851.1-P	Field mustard	plastid	51.99	52.12
CDY29940	Canola	plastid	51.74	51.87
CDY35549	Canola	plastid	51.74	51.74
Os04t0596300-01	Rice	plastid	48.51	48.15
TraesCS2D01G443500.1	Wheat	plastid	46.52	47.7
EES12774	Sorghum	plastid	46.27	46.27
Zm00001d026211_P001	Maize	plastid	46.77	45.3
PGSC0003DMT400083980	Potato	plastid	41.29	39.43
HORVU2Hr1G102880.1	Barley	cytosol, nucleus, plastid	45.52	37.04
PGSC0003DMT400022517	Potato	mitochondrion	20.65	33.33
PGSC0003DMT400053202	Potato	cytosol	22.39	31.14
PGSC0003DMT400022519	Potato	plastid	28.11	28.97
PGSC0003DMT400084936	Potato	cytosol	20.65	27.76

Protein Annotations

EnsemblPlants:PGSC0003DMT400024037	EnsemblPlantsGene:PGSC0003DMG400009299	EntrezGene:102595128	InterPro:At3g17800-like	InterPro:DUF760	ncoils:Coil
PANTHER:PTHR31808	PANTHER:PTHR31808:SF6	PFAM:PF05542	PGSC:PGSC0003DMG400009299	RefSeq:XP_006352932.1	SEG:seg
UniParc:UPI000294AE60	UniProt:M1AJC5	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400009299]

Coordinates

chr8:-:48668848..48672795

Molecular Weight (calculated)

44579.0 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.255

Length

402 amino acids

Sequence
(BLAST)

001: MSVMFADVSV VLPSAAGGLK HSYAFSDSKS LLSPSVSKSS PSFSVPRLGI GLGKAQTRSW TIRATASGSS GGDLVPVAPV QLESAVGQFL AQMLQTHPHL
101: LPAAIEQQLE NLQNERDAQL KENQSSTKDV LQKRIAEVRE KERRKILEEV LYCLIVHKFV DNDISMIPKI SETSDPTGNV GYWPNQEQKL ESVHSPDAFE
201: MIISHITIVL GERAVGPLDS IVQMSKIKLG KLYAASIMYG YFLKRVDERY QLERSVSKPP ESFQISTNPD EPAAPRQLWD PDSLIEIYPE DGDREGFAVS
301: DIEGKPERLR SYVMYLDADT LQRYATLRSK EAVTVIEKQT QALFGRPDIK VSGDGTLDVS NDEVLSVTYS GLTMLVLEAV AFGSFLWETE SYVESKYHII
401: NS

Best Arabidopsis Sequence Match ( AT1G32160.1 )
(BLAST)

001: MQAIGSSHGR RLCFNHYLSD SFSKFLSPSS SPSLLPQRCH SFCIPKLGSS STNENGRGRS VTVRASGDED SNENFAPLAP VELESPVGQL LEQILRTHPH
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA

Arabidopsis Description

At1g32160/F3C3_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVR1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.