Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g007550.1.1 | Tomato | cytosol | 73.58 | 78.29 |
| PGSC0003DMT400053202 | Potato | cytosol | 66.22 | 68.51 |
| PGSC0003DMT400022517 | Potato | mitochondrion | 37.79 | 45.38 |
| VIT_00s0360g00020.t01 | Wine grape | mitochondrion | 33.78 | 41.22 |
| PGSC0003DMT400022519 | Potato | plastid | 51.84 | 39.74 |
| VIT_00s2037g00010.t01 | Wine grape | cytosol | 14.05 | 39.25 |
| AT5G48590.1 | Thale cress | plastid | 41.81 | 36.34 |
| CDY34905 | Canola | plastid | 41.47 | 36.26 |
| CDX86293 | Canola | plastid | 41.14 | 36.18 |
| Bra037475.1-P | Field mustard | plastid | 41.14 | 36.18 |
| AT3G07310.1 | Thale cress | plastid | 44.15 | 35.87 |
| CDX85350 | Canola | plastid | 40.47 | 35.59 |
| Bra040372.1-P | Field mustard | plastid | 41.47 | 35.33 |
| CDY60823 | Canola | plastid | 40.8 | 34.66 |
| Bra029638.1-P | Field mustard | plastid | 42.47 | 34.51 |
| CDY28064 | Canola | plastid | 42.47 | 34.42 |
| CDY24630 | Canola | plastid | 42.81 | 34.13 |
| KRH46625 | Soybean | plastid | 41.14 | 32.45 |
| KRH07429 | Soybean | plastid | 41.81 | 32.22 |
| KRG99623 | Soybean | plastid | 39.8 | 31.99 |
| KRH66142 | Soybean | plastid | 41.81 | 31.81 |
| TraesCS1A01G390400.1 | Wheat | mitochondrion | 38.8 | 29.67 |
| TraesCS1D01G398600.1 | Wheat | mitochondrion | 38.8 | 29.67 |
| TraesCS1B01G418600.1 | Wheat | mitochondrion | 38.13 | 29.16 |
| Zm00001d049232_P002 | Maize | mitochondrion | 37.12 | 28.46 |
| Os11t0456100-01 | Rice | mitochondrion | 36.45 | 28.24 |
| HORVU1Hr1G086110.1 | Barley | plastid | 37.79 | 27.03 |
| PGSC0003DMT400083980 | Potato | plastid | 30.43 | 21.62 |
| PGSC0003DMT400024037 | Potato | plastid | 27.76 | 20.65 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400084936 | EnsemblPlantsGene:PGSC0003DMG400034507 | InterPro:At3g17800-like | InterPro:DUF760 | ncoils:Coil | PANTHER:PTHR31808 |
| PANTHER:PTHR31808:SF2 | PFAM:PF05542 | PGSC:PGSC0003DMG400034507 | SEG:seg | UniParc:UPI0002948981 | UniProt:M1D8E3 |
| MapMan:35.1 | : | : | : | : | : |
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400034507]
Coordinates
chr6:+:2687988..2689543
Molecular Weight (calculated)
35445.6 Da
IEP (calculated)
6.983
GRAVY (calculated)
-0.355
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MFNGLTAPLV PTTEAGRLLS GYMQNEKELF YEFVEKELEK LEYMRKEALL RCVFSVDTDE VILHRRICEM KKVECQKVVE DVMYMFIVYK FSEIGVHMVP
101: KLSNCMYNGR LEISPCKNWE LESIHSVEVL EMVKEIGWED KWNVKDNWGL TQVKKDYIRY VYGSSMLYGY FFKSASLRYH LEKSFDSNLS FSSSCHLKQK
201: SVPTVSGNKY DNFRSYVANF DNEIMKMCRK PKFNVTVSLM EKHCSALFGD ENQHEEVSTS FASLKRFVLE AVAFGSFLWD AEYHFRKFYR LEEYRSHFY
101: KLSNCMYNGR LEISPCKNWE LESIHSVEVL EMVKEIGWED KWNVKDNWGL TQVKKDYIRY VYGSSMLYGY FFKSASLRYH LEKSFDSNLS FSSSCHLKQK
201: SVPTVSGNKY DNFRSYVANF DNEIMKMCRK PKFNVTVSLM EKHCSALFGD ENQHEEVSTS FASLKRFVLE AVAFGSFLWD AEYHFRKFYR LEEYRSHFY
001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI
Arabidopsis Description
F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.