CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	KRH16959	AT5G24660.1	21798944
AT3G07310.1	KRH53667	AT5G24660.1	21798944
AT3G07310.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66142	Soybean	plastid	90.46	89.31
KRH46625	Soybean	plastid	63.66	65.17
KRG99623	Soybean	plastid	62.11	64.78
VIT_00s0360g00020.t01	Wine grape	mitochondrion	37.89	60.0
VIT_00s2037g00010.t01	Wine grape	cytosol	15.46	56.07
PGSC0003DMT400022517	Potato	mitochondrion	33.25	51.81
CDX85350	Canola	plastid	43.81	50.0
AT3G07310.1	Thale cress	plastid	47.16	49.73
Bra037475.1-P	Field mustard	plastid	43.3	49.41
CDX86293	Canola	plastid	43.3	49.41
AT5G48590.1	Thale cress	plastid	43.3	48.84
Bra029638.1-P	Field mustard	plastid	45.88	48.37
CDY28064	Canola	plastid	44.85	47.15
CDY24630	Canola	plastid	45.1	46.67
CDY34905	Canola	plastid	40.72	46.2
PGSC0003DMT400022519	Potato	plastid	46.39	46.15
Bra040372.1-P	Field mustard	plastid	41.49	45.87
Solyc09g057580.2.1	Tomato	plastid	24.74	45.07
CDY60823	Canola	plastid	40.72	44.89
PGSC0003DMT400053202	Potato	cytosol	32.22	43.25
PGSC0003DMT400084936	Potato	cytosol	32.22	41.81
Solyc06g007550.1.1	Tomato	cytosol	28.87	39.86
Os11t0456100-01	Rice	mitochondrion	36.34	36.53
TraesCS1A01G390400.1	Wheat	mitochondrion	36.6	36.32
TraesCS1B01G418600.1	Wheat	mitochondrion	36.34	36.06
Solyc06g007560.1.1	Tomato	plastid	33.25	35.64
TraesCS1D01G398600.1	Wheat	mitochondrion	35.82	35.55
Zm00001d049232_P002	Maize	mitochondrion	35.57	35.38
HORVU1Hr1G086110.1	Barley	plastid	37.63	34.93
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.64	28.33
KRH41876	Soybean	plastid	28.61	27.48
KRH60570	Soybean	plastid	28.09	27.25
KRH39607	Soybean	golgi	28.61	27.21
KRH48705	Soybean	plastid	28.09	26.72
KRH39016	Soybean	plastid	27.84	26.09

Protein Annotations

EMBL:ACUP02009990	EnsemblPlants:KRH07429	EnsemblPlantsGene:GLYMA_16G088400	EntrezGene:100804253	InterPro:At3g17800-like	InterPro:DUF760
PANTHER:PTHR31808	PANTHER:PTHR31808:SF2	PFAM:PF05542	ProteinID:KRH07429	ProteinID:KRH07429.1	SEG:seg
UniParc:UPI000233B1B9	UniProt:I1MM94	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:11226312..11231004

Molecular Weight (calculated)

43980.9 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.096

Length

388 amino acids

Sequence
(BLAST)

001: MESCIFRYHH PTLLTLPSIS HKPHFRFFTR PDLGGGGVSS SSSCFLYYRR RPFIRASAGA SPCEFSSLNS PLEPRSMVGK FLSAVLQNHP QMFHVAVGEE
101: LKLLAEDRDA AHARMVLGSA SDEALLHRRI AQVKENQCQI AVEDVMYLLI FYKFSEIRVP MVPKLSSCLY NGRLEILPSK DWELESIHSS EVLDMIREHI
201: TTVTGLRAKS SVTECWATTQ VRQFLLARVY VASILYGYFL KSVSLRYHLE RNLSLANHDL HLGHRTSVMF SYGFKDAIFG HLSNMPSLGQ GLIRPEEEIE
301: DLKCYVMSFH PGSLQRCARL RSKEAVNLVG SYSCALFNNK ESGSVENDDV ILTSFSSLKR LVLEAVAFGS FLWETEDYID NVYKLKDD

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.