Factsheet for VIT_00s2037g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0360g00020.t01	Wine grape	mitochondrion	86.92	37.96
PGSC0003DMT400022517	Potato	mitochondrion	58.88	25.3
Bra037475.1-P	Field mustard	plastid	52.34	16.47
CDX86293	Canola	plastid	52.34	16.47
PGSC0003DMT400022519	Potato	plastid	58.88	16.15
KRG99623	Soybean	plastid	56.07	16.13
CDX85350	Canola	plastid	50.47	15.88
KRH46625	Soybean	plastid	56.07	15.83
PGSC0003DMT400053202	Potato	cytosol	42.06	15.57
KRH66142	Soybean	plastid	57.01	15.52
AT3G07310.1	Thale cress	plastid	53.27	15.49
KRH07429	Soybean	plastid	56.07	15.46
AT5G48590.1	Thale cress	plastid	48.6	15.12
CDY34905	Canola	plastid	47.66	14.91
Bra029638.1-P	Field mustard	plastid	50.47	14.67
CDY28064	Canola	plastid	50.47	14.63
Bra040372.1-P	Field mustard	plastid	46.73	14.24
CDY24630	Canola	plastid	49.53	14.13
PGSC0003DMT400084936	Potato	cytosol	39.25	14.05
CDY60823	Canola	plastid	45.79	13.92
TraesCS1B01G418600.1	Wheat	mitochondrion	47.66	13.04
TraesCS1A01G390400.1	Wheat	mitochondrion	47.66	13.04
TraesCS1D01G398600.1	Wheat	mitochondrion	46.73	12.79
Zm00001d049232_P002	Maize	mitochondrion	45.79	12.56
Os11t0456100-01	Rice	mitochondrion	44.86	12.44
HORVU1Hr1G086110.1	Barley	plastid	47.66	12.2
VIT_02s0012g02240.t01	Wine grape	plastid	45.79	12.16
VIT_17s0119g00070.t01	Wine grape	plastid	46.73	11.93
Solyc06g007560.1.1	Tomato	plastid	39.25	11.6
Solyc06g007550.1.1	Tomato	cytosol	28.97	11.03
VIT_15s0024g00690.t01	Wine grape	plastid	39.25	10.22
Solyc09g057580.2.1	Tomato	plastid	2.8	1.41

Protein Annotations

ArrayExpress:VIT_00s2037g00010	EMBL:FN595116	EnsemblPlants:VIT_00s2037g00010.t01	EnsemblPlantsGene:VIT_00s2037g00010	InterPro:At3g17800-like	InterPro:DUF760
PANTHER:PTHR31808	PANTHER:PTHR31808:SF2	PFAM:PF05542	ProteinID:CCB45362	ProteinID:CCB45362.1	UniParc:UPI0002108FA3
UniProt:F6GZH6	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:40931922..40932542

Molecular Weight (calculated)

12020.1 Da

IEP (calculated)

4.627

GRAVY (calculated)

-0.487

Length

107 amino acids

Sequence
(BLAST)

001: SQPTSLGEAS SRQEEKEEKK LRCYVMGFDP DTLQRCAKLK SKEAVNLVEK HSCALFGDEK TGLLETDDVI STSFSSMKRL VLEAVAFGSF LWDTEEYVGS
101: VYNLKEN

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.