Factsheet for Solyc06g007560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT3G07310.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT3G07310.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT3G07310.1	Solyc06g072990.1.1	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053202	Potato	cytosol	74.59	93.43
Solyc06g007550.1.1	Tomato	cytosol	48.34	62.28
Solyc09g057580.2.1	Tomato	plastid	26.24	44.6
VIT_00s0360g00020.t01	Wine grape	mitochondrion	29.83	44.08
CDY34905	Canola	plastid	37.57	39.77
VIT_00s2037g00010.t01	Wine grape	cytosol	11.6	39.25
Bra040372.1-P	Field mustard	plastid	37.85	39.03
AT5G48590.1	Thale cress	plastid	36.46	38.37
CDY60823	Canola	plastid	37.29	38.35
CDX86293	Canola	plastid	35.91	38.24
Bra037475.1-P	Field mustard	plastid	35.91	38.24
AT3G07310.1	Thale cress	plastid	38.4	37.77
CDX85350	Canola	plastid	35.36	37.65
Bra029638.1-P	Field mustard	plastid	37.57	36.96
CDY28064	Canola	plastid	37.57	36.86
CDY24630	Canola	plastid	37.57	36.27
KRH46625	Soybean	plastid	36.19	34.56
KRG99623	Soybean	plastid	34.25	33.33
KRH07429	Soybean	plastid	35.64	33.25
KRH66142	Soybean	plastid	35.36	32.57
TraesCS1D01G398600.1	Wheat	mitochondrion	32.87	30.43
TraesCS1A01G390400.1	Wheat	mitochondrion	32.6	30.18
TraesCS1B01G418600.1	Wheat	mitochondrion	32.32	29.92
Zm00001d049232_P002	Maize	mitochondrion	31.77	29.49
Os11t0456100-01	Rice	mitochondrion	30.66	28.76
HORVU1Hr1G086110.1	Barley	plastid	32.04	27.75
Solyc03g098000.2.1	Tomato	plastid	25.69	24.09
Solyc08g076090.2.1	Tomato	nucleus, plastid	25.69	23.13

Protein Annotations

EnsemblPlants:Solyc06g007560.1.1	EnsemblPlantsGene:Solyc06g007560.1	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF2
PFAM:PF05542	UniParc:UPI0002766314	UniProt:K4C3D7	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6:-:1561713..1563890

Molecular Weight (calculated)

41975.4 Da

IEP (calculated)

8.250

GRAVY (calculated)

-0.341

Length

362 amino acids

Sequence
(BLAST)

001: MDCVCSYSKI SLSQFRRFSS FNLQSSTLFK KNPLPLMVSC RNNHNNNDEK CMFNGLTAPL VPRTETGRLL SVFMQNDKAL FNGFVEKELE RLDCMKNDAL
101: LRSVFSVGTD EAILHRRISE KIKLECRNTV EDIMYMFIVN KFSQIGVHMV PKLSNCICNG RLEIFPRRDY ELKSIHSVEV LEMVKEIGWE DMRKSNVKDS
201: WGLTQVQKDQ IRHVYGASIL YGYFFKSTSF RYHLEQSFVK TYSNISFPRS WLLKQKGVPL SDTGSTSVDP VSLNEGKKYD NFRSYVTNLD DEIMIMCSKP
301: KFKEAKSLIE KHCSALFGNE SNEEVSTSFA SLKRFVLEAL AFGTFLWDAE DHVRKFYQLE EF

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.