CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	KRH16959	AT5G24660.1	21798944
AT3G07310.1	KRH53667	AT5G24660.1	21798944
AT3G07310.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07429	Soybean	plastid	89.31	90.46
KRG99623	Soybean	plastid	61.07	64.52
KRH46625	Soybean	plastid	62.09	64.38
VIT_00s0360g00020.t01	Wine grape	mitochondrion	36.9	59.18
VIT_00s2037g00010.t01	Wine grape	cytosol	15.52	57.01
PGSC0003DMT400022517	Potato	mitochondrion	32.06	50.6
AT3G07310.1	Thale cress	plastid	45.8	48.91
CDX85350	Canola	plastid	42.24	48.82
Bra037475.1-P	Field mustard	plastid	41.73	48.24
CDX86293	Canola	plastid	41.73	48.24
AT5G48590.1	Thale cress	plastid	41.73	47.67
Bra029638.1-P	Field mustard	plastid	44.53	47.55
CDY28064	Canola	plastid	43.51	46.34
CDY24630	Canola	plastid	43.77	45.87
PGSC0003DMT400022519	Potato	plastid	44.53	44.87
CDY34905	Canola	plastid	38.93	44.74
Bra040372.1-P	Field mustard	plastid	39.69	44.44
Solyc09g057580.2.1	Tomato	plastid	23.66	43.66
CDY60823	Canola	plastid	38.93	43.47
PGSC0003DMT400053202	Potato	cytosol	31.81	43.25
PGSC0003DMT400084936	Potato	cytosol	31.81	41.81
Solyc06g007550.1.1	Tomato	cytosol	28.24	39.5
Os11t0456100-01	Rice	mitochondrion	36.13	36.79
Solyc06g007560.1.1	Tomato	plastid	32.57	35.36
Zm00001d049232_P002	Maize	mitochondrion	34.86	35.13
TraesCS1A01G390400.1	Wheat	mitochondrion	34.86	35.04
TraesCS1B01G418600.1	Wheat	mitochondrion	34.35	34.53
TraesCS1D01G398600.1	Wheat	mitochondrion	34.35	34.53
HORVU1Hr1G086110.1	Barley	plastid	35.62	33.49
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.01	28.08
KRH39607	Soybean	golgi	28.5	27.45
KRH41876	Soybean	plastid	27.74	26.98
KRH60570	Soybean	plastid	26.97	26.5
KRH48705	Soybean	plastid	27.23	26.23
KRH39016	Soybean	plastid	26.97	25.6

Protein Annotations

EMBL:ACUP02001906	EnsemblPlants:KRH66142	EnsemblPlantsGene:GLYMA_03G085900	EntrezGene:100793365	InterPro:At3g17800-like	InterPro:DUF760
PANTHER:PTHR31808	PANTHER:PTHR31808:SF2	PFAM:PF05542	ProteinID:KRH66142	ProteinID:KRH66142.1	SEG:seg
UniParc:UPI0002336D68	UniProt:I1JM64	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:25280967..25285887

Molecular Weight (calculated)

44352.5 Da

IEP (calculated)

7.056

GRAVY (calculated)

-0.033

Length

393 amino acids

Sequence
(BLAST)

001: MENCIFHYHH HTLLTLPSIS HKPHFRFFTR PDLGGGGGGV RVASSSSSCL LFHRRRPFIR ASAGASPCEF SSLNSPLEPR SMVGKFLIGV LQNHPQMFHL
101: AVGEELKLLA EDRDAAHARM VLGSASDEAL LHRRIALVKE NQCQIAVEDV IYLLIFYKFS EIRVPMVPKL SSCLYNGRLE ILPSKDWELE SIHSLEVLDM
201: IREHITTVTG LRAKSSVTEC WATTHVRQFL LARVYVASIL YGYFLKSVSL RYHLERNLSL ANHDLHLGHK TSLMCSYGFK DAIFGHLSNM SSLGQGLIRP
301: EEELEDLKCY VMSFHPGSLQ RCARLRSKEA VNLVGSYSCA LFNNEESGSV ENDDVILTSF SSLKRLVLEA VAFGSFLWEI EDYIDNVYNL KDD

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.