Factsheet for PGSC0003DMT400083980

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400060907
PGSC0003DMT400070103
PGSC0003DMT400070106

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	PGSC0003DMT400060907	AT2G41680.1	21798944
AT1G48450.1	PGSC0003DMT400070103	AT2G41680.1	21798944
AT1G48450.1	PGSC0003DMT400070106	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098000.2.1	Tomato	plastid	81.95	89.38
VIT_17s0119g00070.t01	Wine grape	plastid	67.7	68.02
GSMUA_Achr1P22120_001	Banana	plastid	58.91	64.58
CDY19857	Canola	nucleus	15.44	62.5
GSMUA_Achr8P30820_001	Banana	mitochondrion	61.76	62.5
KRH41876	Soybean	plastid	59.86	62.38
CDX95820	Canola	plastid	61.28	62.17
CDX75937	Canola	plastid	61.05	62.08
Bra022245.1-P	Field mustard	plastid	61.05	61.93
KRH60570	Soybean	plastid	58.67	61.75
CDX92162	Canola	plastid	60.81	61.69
CDX82345	Canola	plastid	59.14	61.33
CDY23684	Canola	plastid	58.67	60.69
Bra032255.1-P	Field mustard	plastid	58.67	60.69
Bra001683.1-P	Field mustard	plastid	58.43	60.29
KRH48705	Soybean	plastid	58.43	60.29
KRH39016	Soybean	plastid	58.43	59.42
CDY58279	Canola	plastid	59.62	59.06
AT3G17800.2	Thale cress	plastid	59.86	59.02
AT1G48450.1	Thale cress	plastid	59.14	58.87
TraesCS4D01G050700.1	Wheat	plastid	56.77	58.29
TraesCS4B01G050500.1	Wheat	plastid	56.53	58.19
HORVU4Hr1G008300.1	Barley	plastid	56.29	58.09
TraesCS4A01G264500.1	Wheat	plastid	56.53	57.63
KXG37708	Sorghum	plastid	56.06	56.87
Zm00001d033787_P001	Maize	plastid	55.11	54.85
Zm00001d013411_P002	Maize	plastid	53.44	54.09
VIT_15s0024g00690.t01	Wine grape	plastid	52.49	53.77
Os03t0717900-01	Rice	cytosol	56.29	52.09
PGSC0003DMT400024037	Potato	plastid	39.43	41.29
PGSC0003DMT400022517	Potato	mitochondrion	20.9	35.34
PGSC0003DMT400053202	Potato	cytosol	21.14	30.8
PGSC0003DMT400022519	Potato	plastid	28.5	30.77
PGSC0003DMT400084936	Potato	cytosol	21.62	30.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400083980	EnsemblPlantsGene:PGSC0003DMG400033689	EntrezGene:102601007	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808
PANTHER:PTHR31808:SF4	PFAM:PF05542	PGSC:PGSC0003DMG400033689	RefSeq:XP_006363989.1	RefSeq:XP_015159202.1	SEG:seg
UniParc:UPI000296E96B	UniProt:M1D7G4	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400033689]

Coordinates

chr3:-:45275671..45279539

Molecular Weight (calculated)

46347.9 Da

IEP (calculated)

6.809

GRAVY (calculated)

-0.337

Length

421 amino acids

Sequence
(BLAST)

001: METATAFRSG FSICYKPTKA SLDGSDFVRV GSQLRMSPSG IKLYPSISHV KLSNRKVSFG SRKYTAIRAS VSPSESGGSA APIAPLQLES PIGQFLSQIL
101: TSHPHLVPAA VDQQLELLKT DRDAEQQKEE PSPAGTDIVL YRRIAEVKAN ERKKTLEEIL YALVVQKFMD ANVSLVPAIS PSSSEPSGRI DTWPSQDDKL
201: EHLHSPEANE MIQNHLSLIL GSRLGDNSAV AQISKLRVGQ VYAASIMYGY FLRRVDQRFQ LEKSMKVLPQ GVDDEDSSIQ QVAGEDISGD RSDTSFRSTT
301: QTHPELTSWS AGGASPGGFG QGIKPSRLRN YVMSFDGETL QRYATIRSRE AIGMIEKHTE ALFGRPEIVI TPQGTIDSSK DELIKISFGG LRRLVLEAVT
401: FGSFLWDVES YVDSRYHFVA N

Best Arabidopsis Sequence Match ( AT3G17800.2 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRVC PKSLQNASAR SSRSLQSLTT TAKTRRSFVV RASSASNDAS SGSSPKPIAP
101: LQLQSPAGQF LSQILVSHPH LVPAAVEQQL EQLQTDRDSQ GQNKDSASVP GTDIVLYRRI AELKENERRR TLEEILYALV VQKFMEANVS LVPSVSPSSD
201: PSGRVDTWPT KVEKLERLHS PEMYEMIHNH LALILGSRMG DLNSVAQISK LRVGQVYAAS VMYGYFLKRV DQRFQLEKTM KILPGGSDES KTSVEQAEGT
301: ATYQAAVSSH PEVGAFAGGV SAKGFGSEIK PSRLRSYVMS FDAETLQRYA TIRSREAVGI IEKHTEALFG KPEIVITPEG TVDSSKDEQI KISFGGMKRL
401: VLEAVTFGSF LWDVESHVDA RYHFVLN

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.