Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr8P09560_001 | |
| GSMUA_Achr8P09570_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48450.1 | GSMUA_Achr11P... | AT2G41680.1 | 21798944 |
| AT1G48450.1 | GSMUA_Achr8P09560_001 | AT2G41680.1 | 21798944 |
| AT1G48450.1 | GSMUA_Achr8P09570_001 | AT2G41680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P30820_001 | Banana | mitochondrion | 77.08 | 71.15 |
| Solyc03g098000.2.1 | Tomato | plastid | 63.28 | 62.95 |
| KXG37708 | Sorghum | plastid | 66.41 | 61.45 |
| HORVU4Hr1G008300.1 | Barley | plastid | 64.06 | 60.29 |
| TraesCS4B01G050500.1 | Wheat | plastid | 64.06 | 60.15 |
| TraesCS4D01G050700.1 | Wheat | plastid | 64.06 | 60.0 |
| Zm00001d033787_P001 | Maize | plastid | 65.62 | 59.57 |
| TraesCS4A01G264500.1 | Wheat | plastid | 64.06 | 59.56 |
| PGSC0003DMT400083980 | Potato | plastid | 64.58 | 58.91 |
| KRH60570 | Soybean | plastid | 60.94 | 58.5 |
| KRH41876 | Soybean | plastid | 61.46 | 58.42 |
| Zm00001d013411_P002 | Maize | plastid | 63.02 | 58.17 |
| VIT_17s0119g00070.t01 | Wine grape | plastid | 62.24 | 57.04 |
| CDX82345 | Canola | plastid | 59.64 | 56.4 |
| CDX95820 | Canola | plastid | 60.94 | 56.39 |
| CDY23684 | Canola | plastid | 59.64 | 56.27 |
| Bra032255.1-P | Field mustard | plastid | 59.64 | 56.27 |
| AT3G17800.2 | Thale cress | plastid | 62.5 | 56.21 |
| CDX92162 | Canola | plastid | 60.68 | 56.14 |
| Bra022245.1-P | Field mustard | plastid | 60.16 | 55.66 |
| Bra001683.1-P | Field mustard | plastid | 59.11 | 55.64 |
| KRH48705 | Soybean | plastid | 58.59 | 55.15 |
| CDX75937 | Canola | plastid | 59.38 | 55.07 |
| Os03t0717900-01 | Rice | cytosol | 65.1 | 54.95 |
| KRH39016 | Soybean | plastid | 59.11 | 54.83 |
| CDY58279 | Canola | plastid | 60.42 | 54.59 |
| AT1G48450.1 | Thale cress | plastid | 59.9 | 54.37 |
| CDY19857 | Canola | nucleus | 13.28 | 49.04 |
| VIT_15s0024g00690.t01 | Wine grape | plastid | 51.82 | 48.42 |
| GSMUA_Achr8P14670_001 | Banana | cytosol | 40.62 | 47.71 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P22120_001 | EnsemblPlants:GSMUA_Achr1T22120_001 | EnsemblPlantsGene:GSMUA_Achr1G22120_001 | InterPro:At3g17800-like | InterPro:DUF760 | PANTHER:PTHR31808 |
| PANTHER:PTHR31808:SF4 | PFAM:PF05542 | SEG:seg | UniParc:UPI000294EF42 | UniProt:M0S220 | MapMan:35.1 |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G22120_001]
Coordinates
chr1:-:16627788..16629899
Molecular Weight (calculated)
43008.5 Da
IEP (calculated)
6.917
GRAVY (calculated)
-0.256
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIHLLPPDA SSLRTVTALP HPHFHDLFPN SPSSVSIRSF QSVRLGYCPI SLSKQGQRRI GARRSTIVRA SSSSPSSDPI APLQLESPIG QFLSQILVSH
101: PHLLPAAVDQ QLEQLQTDRE AAKNKEEPTP ADTDIVLYRR IAEVKANERR RALEEILYAL VVQKFVEADV SLVPAICQSA DPSGKVDQWP PEDEKLERLH
201: SAEAYEMIKN HLALILGQRT SDTNLVAPIS KLRVGQVYAA SVMYGYFLKR VDQRFQLEKS MKTLPWGSDV EESAIKQAMI DESGGMKPCR LRSYVMSFDS
301: DTLQRHATIR SKEAFSIIEK HTEALFGRPE IVITPEGAID SSKDELIKIS FAGLRRLILE AVTFGSFLWD VESYVDSRYH FVTN
101: PHLLPAAVDQ QLEQLQTDRE AAKNKEEPTP ADTDIVLYRR IAEVKANERR RALEEILYAL VVQKFVEADV SLVPAICQSA DPSGKVDQWP PEDEKLERLH
201: SAEAYEMIKN HLALILGQRT SDTNLVAPIS KLRVGQVYAA SVMYGYFLKR VDQRFQLEKS MKTLPWGSDV EESAIKQAMI DESGGMKPCR LRSYVMSFDS
301: DTLQRHATIR SKEAFSIIEK HTEALFGRPE IVITPEGAID SSKDELIKIS FAGLRRLILE AVTFGSFLWD VESYVDSRYH FVTN
001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRVC PKSLQNASAR SSRSLQSLTT TAKTRRSFVV RASSASNDAS SGSSPKPIAP
101: LQLQSPAGQF LSQILVSHPH LVPAAVEQQL EQLQTDRDSQ GQNKDSASVP GTDIVLYRRI AELKENERRR TLEEILYALV VQKFMEANVS LVPSVSPSSD
201: PSGRVDTWPT KVEKLERLHS PEMYEMIHNH LALILGSRMG DLNSVAQISK LRVGQVYAAS VMYGYFLKRV DQRFQLEKTM KILPGGSDES KTSVEQAEGT
301: ATYQAAVSSH PEVGAFAGGV SAKGFGSEIK PSRLRSYVMS FDAETLQRYA TIRSREAVGI IEKHTEALFG KPEIVITPEG TVDSSKDEQI KISFGGMKRL
401: VLEAVTFGSF LWDVESHVDA RYHFVLN
101: LQLQSPAGQF LSQILVSHPH LVPAAVEQQL EQLQTDRDSQ GQNKDSASVP GTDIVLYRRI AELKENERRR TLEEILYALV VQKFMEANVS LVPSVSPSSD
201: PSGRVDTWPT KVEKLERLHS PEMYEMIHNH LALILGSRMG DLNSVAQISK LRVGQVYAAS VMYGYFLKRV DQRFQLEKTM KILPGGSDES KTSVEQAEGT
301: ATYQAAVSSH PEVGAFAGGV SAKGFGSEIK PSRLRSYVMS FDAETLQRYA TIRSREAVGI IEKHTEALFG KPEIVITPEG TVDSSKDEQI KISFGGMKRL
401: VLEAVTFGSF LWDVESHVDA RYHFVLN
Arabidopsis Description
Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.