Factsheet for Zm00001d033787_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d022381_P016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	Zm00001d022381_P016	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37708	Sorghum	plastid	88.65	90.36
Zm00001d013411_P002	Maize	plastid	86.05	87.5
TraesCS4B01G050500.1	Wheat	plastid	73.52	76.04
HORVU4Hr1G008300.1	Barley	plastid	73.05	75.74
TraesCS4D01G050700.1	Wheat	plastid	72.81	75.12
TraesCS4A01G264500.1	Wheat	plastid	72.81	74.58
Os03t0717900-01	Rice	cytosol	76.6	71.21
GSMUA_Achr1P22120_001	Banana	plastid	59.57	65.62
GSMUA_Achr8P30820_001	Banana	mitochondrion	61.47	62.5
CDY19857	Canola	nucleus	14.66	59.62
Solyc03g098000.2.1	Tomato	plastid	53.9	59.07
CDX95820	Canola	plastid	57.21	58.31
CDX82345	Canola	plastid	55.79	58.13
Bra022245.1-P	Field mustard	plastid	56.97	58.07
AT3G17800.2	Thale cress	plastid	58.16	57.61
CDX92162	Canola	plastid	56.03	57.11
Bra001683.1-P	Field mustard	plastid	54.85	56.86
CDX75937	Canola	plastid	55.56	56.76
CDY23684	Canola	plastid	53.9	56.02
Bra032255.1-P	Field mustard	plastid	53.9	56.02
KRH60570	Soybean	plastid	52.96	56.0
KRH41876	Soybean	plastid	53.19	55.69
PGSC0003DMT400083980	Potato	plastid	54.85	55.11
KRH39016	Soybean	plastid	53.66	54.83
KRH48705	Soybean	plastid	52.72	54.66
CDY58279	Canola	plastid	54.85	54.59
VIT_17s0119g00070.t01	Wine grape	plastid	53.43	53.94
AT1G48450.1	Thale cress	plastid	53.66	53.66
VIT_15s0024g00690.t01	Wine grape	plastid	45.39	46.72
Zm00001d026211_P001	Maize	plastid	37.83	38.55
Zm00001d049232_P002	Maize	mitochondrion	28.37	30.77

Protein Annotations

EMBL:BT042797	EnsemblPlants:Zm00001d033787_P001	EnsemblPlants:Zm00001d033787_T001	EnsemblPlantsGene:Zm00001d033787	InterPro:At3g17800-like	InterPro:DUF760
ncoils:Coil	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4	PFAM:PF05542	ProteinID:ONM08616.1	SEG:seg
UniParc:UPI00017B7D39	UniProt:B4G0A9	MapMan:35.1	:	:	:

Description

UV-B-induced protein chloroplastic

Coordinates

chr1:+:273742640..273745271

Molecular Weight (calculated)

46631.3 Da

IEP (calculated)

7.394

GRAVY (calculated)

-0.344

Length

423 amino acids

Sequence
(BLAST)

001: MEAAAVAAAL RSPTATTAAA AAGPTWRAAA PGAASLAFDR RRSFAFGSIK GLGRQQLTSR STRRRSSVVR ASWSPSESLP PSSSIAPLRM ESPAGQLLSQ
101: ILHTHPHLLS AAAEQQLEQL QTDREADKEK DKESDAGDKL APTGGDLVLY RRIAEVKEKE RRRTLEEILY ALVVQKFVEA GVSLVPALSR STDPSGRVDQ
201: WAETVEEKLQ RLHSHEAYEM IENHLTLILG QRQGDATIAA ISKLRVGQVY AASVMYGYFL KRVDQRFQLE KTMKGLPWGS EEEDSALNQV MMTDLMPSAQ
301: TSSSHPEMGS WTAPAFSTGG PSQSIKPCRL RSYVMSFDSD TLQRYATVRS KEAFGIIEKH TEALFGKPEI VITPEGTLDS SKDEHIRISF AGLRRLILEA
401: VTFGSFLWDV ESFVDSRYHF VTS

Best Arabidopsis Sequence Match ( AT3G17800.1 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.