CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001683.1-P	Field mustard	plastid	91.38	90.93
CDX75937	Canola	plastid	90.39	88.65
CDX92162	Canola	plastid	79.56	77.83
CDY19857	Canola	nucleus	19.7	76.92
AT3G17800.2	Thale cress	plastid	80.05	76.11
CDX95820	Canola	plastid	77.59	75.9
CDY23684	Canola	plastid	64.53	64.37
CDY58279	Canola	plastid	65.52	62.59
Solyc03g098000.2.1	Tomato	plastid	59.11	62.18
KRH60570	Soybean	plastid	61.08	62.0
KRH41876	Soybean	plastid	60.34	60.64
VIT_17s0119g00070.t01	Wine grape	plastid	62.07	60.14
GSMUA_Achr1P22120_001	Banana	plastid	56.4	59.64
KRH48705	Soybean	plastid	59.85	59.56
KRH39016	Soybean	plastid	60.59	59.42
PGSC0003DMT400083980	Potato	plastid	61.33	59.14
KXG37708	Sorghum	plastid	59.85	58.55
TraesCS4B01G050500.1	Wheat	plastid	58.37	57.95
HORVU4Hr1G008300.1	Barley	plastid	58.13	57.84
TraesCS4D01G050700.1	Wheat	plastid	58.13	57.56
TraesCS4A01G264500.1	Wheat	plastid	58.37	57.38
GSMUA_Achr8P30820_001	Banana	mitochondrion	58.37	56.97
Zm00001d033787_P001	Maize	plastid	58.13	55.79
Zm00001d013411_P002	Maize	plastid	56.65	55.29
VIT_15s0024g00690.t01	Wine grape	plastid	52.96	52.31
Os03t0717900-01	Rice	cytosol	57.64	51.43
CDY29940	Canola	plastid	41.63	42.14
CDY35549	Canola	plastid	41.13	41.54
CDX86293	Canola	plastid	27.83	33.24
CDY34905	Canola	plastid	27.34	32.46
CDX85350	Canola	plastid	26.85	32.06
CDY60823	Canola	plastid	27.59	31.82
CDY28064	Canola	plastid	28.33	31.17
CDY24630	Canola	plastid	28.57	30.93

Protein Annotations

EnsemblPlants:CDX82345	EnsemblPlantsGene:GSBRNA2T00137465001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4
PFAM:PF05542	ProteinID:CDX82345	ProteinID:CDX82345.1	SEG:seg	UniParc:UPI0004EDDBAE	MapMan:35.1

Description

BnaA03g34760D

Coordinates

chrLK031828:+:779538..782421

Molecular Weight (calculated)

44633.2 Da

IEP (calculated)

7.980

GRAVY (calculated)

-0.283

Length

406 amino acids

Sequence
(BLAST)

001: MDAATASLIR SPLLPHETSR NGTGSIFLTA SGPGFTPGSK LQLRLKQNSL TRFSKPLQSS TTASKTRRSF VVKASAASDD ASSKPIAPLQ LESPAGQFLS
101: QILVSHPHLV PAAVEQQLEQ LQTDRDSQGQ NTDTSSSLPG TDIVLYRRIA ELKENERRRT LEEILYALVV QKFMEANVSL IPSITPSSDP SGRVDTWPTK
201: VEKLEQLHSP EMYEMIHNHL ALILGSRIGD LTSVAQISKL RVGQVYAASV IYGYFLKRVD QRFQLEKTMK LLPGSGGAEE KQPEDVSSHP EVGSFAGGVS
301: AKGFGSEIKP SRLRTYVMSF DSETLQRYAT IRSREAVGII EKHTEALFGK PEIVITPQGI VDSSNDEQIK ISFGGMKRLV LEAVTFGSFL WDVESHVDAR
401: YQFVLN

Best Arabidopsis Sequence Match ( AT3G17800.1 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.