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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX75937 Canola plastid 77.75 80.19
CDX82345 Canola plastid 76.11 80.05
CDX95820 Canola plastid 77.28 79.52
CDX92162 Canola plastid 77.28 79.52
Bra022245.1-P Field mustard plastid 75.18 77.35
Bra001683.1-P Field mustard plastid 72.13 75.49
CDY19857 Canola nucleus 18.27 75.0
AT1G48450.1 Thale cress plastid 65.34 65.96
Solyc03g098000.2.1 Tomato plastid 57.14 63.21
GSMUA_Achr1P22120_001 Banana plastid 56.21 62.5
VIT_17s0119g00070.t01 Wine grape plastid 60.66 61.81
KRH60570 Soybean plastid 57.38 61.25
KRH41876 Soybean plastid 57.14 60.4
PGSC0003DMT400083980 Potato plastid 59.02 59.86
TraesCS4A01G264500.1 Wheat plastid 57.85 59.81
HORVU4Hr1G008300.1 Barley plastid 57.14 59.8
KXG37708 Sorghum plastid 58.08 59.76
TraesCS4B01G050500.1 Wheat plastid 57.14 59.66
TraesCS4D01G050700.1 Wheat plastid 57.14 59.51
GSMUA_Achr8P30820_001 Banana mitochondrion 57.85 59.38
KRH39016 Soybean plastid 57.14 58.94
KRH48705 Soybean plastid 55.97 58.58
Zm00001d033787_P001 Maize plastid 57.61 58.16
Zm00001d013411_P002 Maize plastid 56.21 57.69
VIT_15s0024g00690.t01 Wine grape plastid 52.46 54.5
Os03t0717900-01 Rice cytosol 56.91 53.41
AT1G32160.1 Thale cress nucleus, plastid 38.41 40.39
AT5G48590.1 Thale cress plastid 26.93 33.43
AT3G07310.1 Thale cress plastid 27.17 31.52
Protein Annotations
MapMan:35.1EntrezGene:821048ProteinID:AEE76009.1ArrayExpress:AT3G17800EnsemblPlantsGene:AT3G17800RefSeq:AT3G17800
TAIR:AT3G17800RefSeq:AT3G17800-TAIR-GEnsemblPlants:AT3G17800.2TAIR:AT3G17800.2Unigene:At.71032InterPro:At3g17800-like
InterPro:DUF760RefSeq:NP_001078173.1PFAM:PF05542PO:PO:0000013PO:PO:0000037PO:PO:0000084
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR31808PANTHER:PTHR31808:SF4
UniParc:UPI0001505744SEG:seg::::
Description
Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
Coordinates
chr3:-:6091110..6093151
Molecular Weight (calculated)
46697.6 Da
IEP (calculated)
9.672
GRAVY (calculated)
-0.298
Length
427 amino acids
Sequence
(BLAST)
001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRVC PKSLQNASAR SSRSLQSLTT TAKTRRSFVV RASSASNDAS SGSSPKPIAP
101: LQLQSPAGQF LSQILVSHPH LVPAAVEQQL EQLQTDRDSQ GQNKDSASVP GTDIVLYRRI AELKENERRR TLEEILYALV VQKFMEANVS LVPSVSPSSD
201: PSGRVDTWPT KVEKLERLHS PEMYEMIHNH LALILGSRMG DLNSVAQISK LRVGQVYAAS VMYGYFLKRV DQRFQLEKTM KILPGGSDES KTSVEQAEGT
301: ATYQAAVSSH PEVGAFAGGV SAKGFGSEIK PSRLRSYVMS FDAETLQRYA TIRSREAVGI IEKHTEALFG KPEIVITPEG TVDSSKDEQI KISFGGMKRL
401: VLEAVTFGSF LWDVESHVDA RYHFVLN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.