Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d022381_P016 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48450.1 | Zm00001d022381_P016 | AT2G41680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37708 | Sorghum | plastid | 88.94 | 89.16 |
| Zm00001d033787_P001 | Maize | plastid | 87.5 | 86.05 |
| TraesCS4B01G050500.1 | Wheat | plastid | 72.36 | 73.59 |
| HORVU4Hr1G008300.1 | Barley | plastid | 71.63 | 73.04 |
| TraesCS4D01G050700.1 | Wheat | plastid | 71.63 | 72.68 |
| TraesCS4A01G264500.1 | Wheat | plastid | 72.12 | 72.64 |
| Os03t0717900-01 | Rice | cytosol | 76.92 | 70.33 |
| GSMUA_Achr1P22120_001 | Banana | plastid | 58.17 | 63.02 |
| GSMUA_Achr8P30820_001 | Banana | mitochondrion | 59.86 | 59.86 |
| Solyc03g098000.2.1 | Tomato | plastid | 52.64 | 56.74 |
| CDY19857 | Canola | nucleus | 14.18 | 56.73 |
| CDX82345 | Canola | plastid | 55.29 | 56.65 |
| CDX95820 | Canola | plastid | 56.49 | 56.63 |
| AT3G17800.2 | Thale cress | plastid | 57.69 | 56.21 |
| Bra022245.1-P | Field mustard | plastid | 55.53 | 55.66 |
| Bra001683.1-P | Field mustard | plastid | 54.57 | 55.64 |
| CDX75937 | Canola | plastid | 55.29 | 55.56 |
| CDY23684 | Canola | plastid | 54.33 | 55.53 |
| Bra032255.1-P | Field mustard | plastid | 54.33 | 55.53 |
| CDX92162 | Canola | plastid | 55.29 | 55.42 |
| KRH60570 | Soybean | plastid | 52.88 | 55.0 |
| KRH41876 | Soybean | plastid | 53.37 | 54.95 |
| CDY58279 | Canola | plastid | 55.29 | 54.12 |
| VIT_17s0119g00070.t01 | Wine grape | plastid | 54.09 | 53.7 |
| KRH48705 | Soybean | plastid | 52.64 | 53.68 |
| KRH39016 | Soybean | plastid | 53.37 | 53.62 |
| PGSC0003DMT400083980 | Potato | plastid | 54.09 | 53.44 |
| AT1G48450.1 | Thale cress | plastid | 54.09 | 53.19 |
| VIT_15s0024g00690.t01 | Wine grape | plastid | 45.43 | 45.99 |
| Zm00001d026211_P001 | Maize | plastid | 37.26 | 37.35 |
| Zm00001d049232_P002 | Maize | mitochondrion | 28.37 | 30.26 |
Protein Annotations
| EMBL:BT067798 | EnsemblPlants:Zm00001d013411_P002 | EnsemblPlants:Zm00001d013411_T002 | EnsemblPlantsGene:Zm00001d013411 | EntrezGene:100383611 | InterPro:At3g17800-like |
| InterPro:DUF760 | PANTHER:PTHR31808 | PANTHER:PTHR31808:SF4 | PFAM:PF05542 | ProteinID:AQK63404.1 | ProteinID:AQK63406.1 |
| SEG:seg | UniParc:UPI000195CE36 | UniProt:C0PHM9 | MapMan:35.1 | : | : |
Description
UV-B-induced protein chloroplastic
Coordinates
chr5:-:10557969..10560773
Molecular Weight (calculated)
45932.5 Da
IEP (calculated)
8.407
GRAVY (calculated)
-0.339
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAVAAALK SPTAARPSWR PAAPGATSLP FDRRRSFAFG SIKGLGRQQL TSRTRRRSSV VRASWSPSES LPPSSSMAPL RMESPAGQLL SQILHTHPHL
101: LPAAAEQQLE LLQTDREAEK NKDKESDAGD KLAPTGVDLV LYRRIAQVKE KERRRTLEEI LYALVVEKFV EAGVSLVPAL SRSIDSSGRV DQWAETVEGR
201: LQRLHSPEAY EMIENHLALI LGQRQSDATI AAISKLRVGQ VYAASVMYGY FLKRVDQRFQ LEKTMKSLPW GSEEEDGALY QVMTTDSMPS AQSSSSHPEM
301: GSWTAAPDFN AGGPSESIKP CRLRSYVMSF DPDTLQRYAT VRSKEAFGII EKHTEALFGK AEIVVTPGGT VGSSKDEHIR ISFAGLRRLV LEAVTFGSFL
401: WDVESFVDSS YHFVTS
101: LPAAAEQQLE LLQTDREAEK NKDKESDAGD KLAPTGVDLV LYRRIAQVKE KERRRTLEEI LYALVVEKFV EAGVSLVPAL SRSIDSSGRV DQWAETVEGR
201: LQRLHSPEAY EMIENHLALI LGQRQSDATI AAISKLRVGQ VYAASVMYGY FLKRVDQRFQ LEKTMKSLPW GSEEEDGALY QVMTTDSMPS AQSSSSHPEM
301: GSWTAAPDFN AGGPSESIKP CRLRSYVMSF DPDTLQRYAT VRSKEAFGII EKHTEALFGK AEIVVTPGGT VGSSKDEHIR ISFAGLRRLV LEAVTFGSFL
401: WDVESFVDSS YHFVTS
001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N
Arabidopsis Description
Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.