Factsheet for HORVU4Hr1G008300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G023170.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	HORVU2Hr1G023170.1	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G050500.1	Wheat	plastid	96.57	96.33
TraesCS4D01G050700.1	Wheat	plastid	96.57	96.1
TraesCS4A01G264500.1	Wheat	plastid	95.59	94.43
KXG37708	Sorghum	plastid	76.72	75.42
Zm00001d033787_P001	Maize	plastid	75.74	73.05
Os03t0717900-01	Rice	cytosol	79.9	71.65
Zm00001d013411_P002	Maize	plastid	73.04	71.63
GSMUA_Achr1P22120_001	Banana	plastid	60.29	64.06
GSMUA_Achr8P30820_001	Banana	mitochondrion	62.75	61.54
Solyc03g098000.2.1	Tomato	plastid	56.62	59.84
CDY19857	Canola	nucleus	14.95	58.65
CDX82345	Canola	plastid	57.84	58.13
CDX95820	Canola	plastid	58.82	57.83
Bra001683.1-P	Field mustard	plastid	57.35	57.35
AT3G17800.2	Thale cress	plastid	59.8	57.14
CDX92162	Canola	plastid	58.09	57.11
Bra022245.1-P	Field mustard	plastid	57.84	56.87
CDX75937	Canola	plastid	57.6	56.76
KRH48705	Soybean	plastid	56.37	56.37
PGSC0003DMT400083980	Potato	plastid	58.09	56.29
KRH60570	Soybean	plastid	55.15	56.25
KRH39016	Soybean	plastid	56.37	55.56
KRH41876	Soybean	plastid	54.9	55.45
VIT_17s0119g00070.t01	Wine grape	plastid	56.86	55.37
CDY23684	Canola	plastid	53.92	54.05
Bra032255.1-P	Field mustard	plastid	53.92	54.05
AT1G48450.1	Thale cress	plastid	54.66	52.72
CDY58279	Canola	plastid	54.9	52.71
VIT_15s0024g00690.t01	Wine grape	plastid	47.3	46.96
HORVU2Hr1G102880.1	Barley	cytosol, nucleus, plastid	37.25	30.77
HORVU1Hr1G086110.1	Barley	plastid	26.96	26.32

Protein Annotations

EMBL:AK353899	EnsemblPlants:HORVU4Hr1G008300.1	EnsemblPlantsGene:HORVU4Hr1G008300	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808
PANTHER:PTHR31808:SF4	PFAM:PF05542	SEG:seg	UniParc:UPI000200468A	UniProt:F2CQJ7	MapMan:35.1

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CQJ7]

Coordinates

chrchr4H:+:22409667..22412379

Molecular Weight (calculated)

44925.3 Da

IEP (calculated)

7.419

GRAVY (calculated)

-0.282

Length

408 amino acids

Sequence
(BLAST)

001: MEAAAAAAAA LRSPAAAPSR RVAAAAASSL PFERRRSFAL ASVKGLGRQQ LTSRRLRGVV RASSSSPSES LPSSSPIAPL QMESPIGQFL SQILVTHPHL
101: LPAAAEQQLE QLQTVQDSAE KKDAQAPPAA GDIVLYRRIA EVKEKERKRT MEEILYALVV QKFVEAGVSL VPALSHSIDT SSGRVDQWAE HVEGKLERLH
201: SHEAYEMIEN HLNLILGQRQ ADGTVAAISK LRVGQVYAAS VMYGYFLKRV DKRFQLEKSM KSLPWGSEDD TLNQVMTTDS RPSDQTYSSH PEVESWTSPD
301: LSAGGLGQSV KPSRLRSYVM SFDSDTLQTY ATIRSKVAFG IIEKHTEALF GKPEIVITPE GTVDSSKDEY VRISFSGLRR LILEAVTFGS FLWDVESYVD
401: SRYHFVTN

Best Arabidopsis Sequence Match ( AT3G17800.2 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRVC PKSLQNASAR SSRSLQSLTT TAKTRRSFVV RASSASNDAS SGSSPKPIAP
101: LQLQSPAGQF LSQILVSHPH LVPAAVEQQL EQLQTDRDSQ GQNKDSASVP GTDIVLYRRI AELKENERRR TLEEILYALV VQKFMEANVS LVPSVSPSSD
201: PSGRVDTWPT KVEKLERLHS PEMYEMIHNH LALILGSRMG DLNSVAQISK LRVGQVYAAS VMYGYFLKRV DQRFQLEKTM KILPGGSDES KTSVEQAEGT
301: ATYQAAVSSH PEVGAFAGGV SAKGFGSEIK PSRLRSYVMS FDAETLQRYA TIRSREAVGI IEKHTEALFG KPEIVITPEG TVDSSKDEQI KISFGGMKRL
401: VLEAVTFGSF LWDVESHVDA RYHFVLN

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.