Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os07t0657900-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48450.1 | Os07t0657900-02 | AT2G41680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G008300.1 | Barley | plastid | 71.65 | 79.9 |
| TraesCS4B01G050500.1 | Wheat | plastid | 71.43 | 79.46 |
| TraesCS4D01G050700.1 | Wheat | plastid | 71.43 | 79.27 |
| TraesCS4A01G264500.1 | Wheat | plastid | 71.65 | 78.93 |
| KXG37708 | Sorghum | plastid | 71.43 | 78.31 |
| Zm00001d013411_P002 | Maize | plastid | 70.33 | 76.92 |
| Zm00001d033787_P001 | Maize | plastid | 71.21 | 76.6 |
| GSMUA_Achr1P22120_001 | Banana | plastid | 54.95 | 65.1 |
| GSMUA_Achr8P30820_001 | Banana | mitochondrion | 56.48 | 61.78 |
| Solyc03g098000.2.1 | Tomato | plastid | 51.21 | 60.36 |
| CDY19857 | Canola | nucleus | 13.41 | 58.65 |
| Bra001683.1-P | Field mustard | plastid | 52.31 | 58.33 |
| CDX92162 | Canola | plastid | 53.19 | 58.31 |
| CDX95820 | Canola | plastid | 52.97 | 58.07 |
| Bra022245.1-P | Field mustard | plastid | 52.97 | 58.07 |
| CDX82345 | Canola | plastid | 51.43 | 57.64 |
| CDX75937 | Canola | plastid | 52.31 | 57.49 |
| AT3G17800.2 | Thale cress | plastid | 53.41 | 56.91 |
| KRH48705 | Soybean | plastid | 50.99 | 56.86 |
| KRH39016 | Soybean | plastid | 51.65 | 56.76 |
| PGSC0003DMT400083980 | Potato | plastid | 52.09 | 56.29 |
| KRH60570 | Soybean | plastid | 49.45 | 56.25 |
| KRH41876 | Soybean | plastid | 49.67 | 55.94 |
| VIT_17s0119g00070.t01 | Wine grape | plastid | 51.43 | 55.85 |
| CDY23684 | Canola | plastid | 49.45 | 55.28 |
| Bra032255.1-P | Field mustard | plastid | 49.45 | 55.28 |
| CDY58279 | Canola | plastid | 50.33 | 53.88 |
| AT1G48450.1 | Thale cress | plastid | 49.45 | 53.19 |
| VIT_15s0024g00690.t01 | Wine grape | plastid | 42.2 | 46.72 |
| Os04t0596300-01 | Rice | plastid | 35.82 | 40.25 |
| Os11t0456100-01 | Rice | mitochondrion | 27.25 | 32.12 |
Protein Annotations
| EMBL:AK099485 | EnsemblPlants:Os03t0717900-01 | EnsemblPlantsGene:Os03g0717900 | EntrezGene:4333917 | InterPro:At3g17800-like | InterPro:DUF760 |
| PANTHER:PTHR31808 | PANTHER:PTHR31808:SF4 | PFAM:PF05542 | ProteinID:ABF98564.1 | ProteinID:BAF12998.1 | ProteinID:BAS86090.1 |
| RefSeq:XP_015630315.1 | SEG:seg | UniParc:UPI0000DB4AF9 | UniProt:Q10DW0 | MapMan:35.1 | : |
Description
Similar to ABRH7 (Fragment). (Os03t0717900-01);Similar to mRNA, clone: RTFL01-13-K15. (Os03t0717900-02)
Coordinates
chr3:+:29064993..29067556
Molecular Weight (calculated)
49959.4 Da
IEP (calculated)
9.239
GRAVY (calculated)
-0.426
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MHQRPRLPNP TNQPPPRQQK DPQFPRKTLE FDPASRRVGC SPMEAAAAAA AALLSPPAAA APSRRPGTPG ATSLPFARRR GVAAVKGLGR QQLTCRRRGV
101: VVRAASWSPS GPESLPPPPS SSIAPLQMES PVGQFLSQIL ATHPHLLPAA AEQQLEQLQT DRDAAKDNGG DKPAPSDGDI VLYRRIAEVK EKERKRALEE
201: ILYALVVQKF VEAGVSLVPA LSHSISSSGR VDQWAESVEG KLEKMHSQEA YEMIENHLAL ILGQRQADAT VAAISKLRVG QVYAASVMYG YFLKRVDQRF
301: QLEKSMKTLP WGSEEEDKLN QVMTTDSRPS PQTSTSHPEM ASWTSPNFSA GGPSQSVKPC RLRSYVMSFD SETLQSYATI RSKEAFGIIE KHTEALFGKP
401: EIVITPEGTV DSSKDEHVRI SFAGLRRLIL EAVTFGSFLW DVESFVDTRY HFVAN
101: VVRAASWSPS GPESLPPPPS SSIAPLQMES PVGQFLSQIL ATHPHLLPAA AEQQLEQLQT DRDAAKDNGG DKPAPSDGDI VLYRRIAEVK EKERKRALEE
201: ILYALVVQKF VEAGVSLVPA LSHSISSSGR VDQWAESVEG KLEKMHSQEA YEMIENHLAL ILGQRQADAT VAAISKLRVG QVYAASVMYG YFLKRVDQRF
301: QLEKSMKTLP WGSEEEDKLN QVMTTDSRPS PQTSTSHPEM ASWTSPNFSA GGPSQSVKPC RLRSYVMSFD SETLQSYATI RSKEAFGIIE KHTEALFGKP
401: EIVITPEGTV DSSKDEHVRI SFAGLRRLIL EAVTFGSFLW DVESFVDTRY HFVAN
001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N
Arabidopsis Description
Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.