CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79923
CDY22534
CDY23835
CDY35405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	CDX79923	AT2G41680.1	21798944
AT1G48450.1	CDY22534	AT2G41680.1	21798944
AT1G48450.1	CDY23835	AT2G41680.1	21798944
AT1G48450.1	CDY35405	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032255.1-P	Field mustard	plastid	100.0	100.0
CDY58279	Canola	plastid	91.4	87.53
AT1G48450.1	Thale cress	plastid	81.82	78.72
CDX95820	Canola	plastid	67.81	66.51
CDX82345	Canola	plastid	64.37	64.53
CDX92162	Canola	plastid	65.6	64.34
CDX75937	Canola	plastid	65.36	64.25
Solyc03g098000.2.1	Tomato	plastid	58.48	61.66
GSMUA_Achr1P22120_001	Banana	plastid	56.27	59.64
CDY19857	Canola	nucleus	15.23	59.62
VIT_17s0119g00070.t01	Wine grape	plastid	61.18	59.43
KRH60570	Soybean	plastid	57.74	58.75
PGSC0003DMT400083980	Potato	plastid	60.69	58.67
KRH41876	Soybean	plastid	57.74	58.17
KRH48705	Soybean	plastid	57.74	57.6
KXG37708	Sorghum	plastid	58.23	57.11
KRH39016	Soybean	plastid	57.99	57.0
GSMUA_Achr8P30820_001	Banana	mitochondrion	57.74	56.49
Zm00001d013411_P002	Maize	plastid	55.53	54.33
HORVU4Hr1G008300.1	Barley	plastid	54.05	53.92
Zm00001d033787_P001	Maize	plastid	56.02	53.9
TraesCS4B01G050500.1	Wheat	plastid	53.81	53.55
TraesCS4D01G050700.1	Wheat	plastid	53.81	53.41
TraesCS4A01G264500.1	Wheat	plastid	54.05	53.27
VIT_15s0024g00690.t01	Wine grape	plastid	50.61	50.12
Os03t0717900-01	Rice	cytosol	55.28	49.45
CDY29940	Canola	plastid	40.05	40.65
CDY35549	Canola	plastid	39.31	39.8
CDX86293	Canola	plastid	28.26	33.82
CDX85350	Canola	plastid	27.76	33.24
CDY34905	Canola	plastid	27.27	32.46
CDY28064	Canola	plastid	29.24	32.25
CDY60823	Canola	plastid	27.27	31.53
CDY24630	Canola	plastid	28.26	30.67

Protein Annotations

EnsemblPlants:CDY23684	EnsemblPlantsGene:GSBRNA2T00023958001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4
PFAM:PF05542	ProteinID:CDY23684	ProteinID:CDY23684.1	UniParc:UPI0002547CAC	UniProt:A0A078GEF2	MapMan:35.1

Description

BnaA05g17450DBnaA05g17450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEF2]

Coordinates

chrLK032146:-:603328..605033

Molecular Weight (calculated)

45377.7 Da

IEP (calculated)

6.873

GRAVY (calculated)

-0.394

Length

407 amino acids

Sequence
(BLAST)

001: MAASFAQSPS FLRRNASGSI LLTASSPGFI RFSSGPQFRH RHSTCLKLSR PSQSRTTSLK SRRSFVVKSS ASDSIAPLEL KSPVGQFLSQ ILVSHPHLVP
101: AAVEQQLEQL QTDREAEEQI KDSSSSLPGT DIVLYRRIAE VKEKERRKAL EEILYALVVQ KFMDANVSLV PSITSSSGRV DTWPTQDGEL EQLHSPEVYE
201: MIQNHLSIIL KNREGDLSTV AQISKLGVGQ VYAASVMYGY FLKRIDQRFQ LEKTMKILPG GSDEGETSIE QAGRETERSF YEEAEETYQA VSSNQEVGGI
301: NASGGSSSET KQSRLKTYVM SFDGETLQRY ATIRSREAVG IIEKHTEALF GRPEIVITPQ GIDSSKDEHM KISFKGLKRL VLEAVTFGSF LWDVESHVDS
401: RYHFVLN

Best Arabidopsis Sequence Match ( AT1G48450.1 )
(BLAST)

001: MDAVAANLFQ SPSLLRQTSE RLIFSTPNCP GFMRISSGPQ FRLRQNSSLK FSRPFQSGTT CVKSRRSFVV KASASGDAST ESIAPLQLKS PVGQFLSQIL
101: VSHPHLVPAA VEQQLEQLQI DRDAEEQSKD ASSVLGTDIV LYRRIAEVKE KERRRALEEI LYALVVQKFM DANVTLVPSI TSSSADPSGR VDTWPTLDGE
201: LERLHSPEVY EMIQNHLSII LKNRTDDLTA VAQISKLGVG QVYAASVMYG YFLKRIDQRF QLEKTMRILP GGSDEGETSI EQAGRDVERN FYEEAEETYQ
301: AVSSNQDVGS FVGGINASGG FSSDMKQSRL KTYVMSFDGE TLQRYATIRS RESVGIIEKH TEALFGRPEI VITPQGTIDS SKDEHIKISF KGLKRLVLEA
401: VTFGSFLWDV ESHVDSRYHF VLN

Arabidopsis Description

Alanine-tRNA ligase, putative (DUF760) [Source:UniProtKB/TrEMBL;Acc:Q9LP80]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.