Factsheet for Bra032255.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000234.1-P
Bra004639.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	Bra000234.1-P	AT2G41680.1	21798944
AT1G48450.1	Bra004639.1-P	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23684	Canola	plastid	100.0	100.0
AT1G48450.1	Thale cress	plastid	81.82	78.72
Bra022245.1-P	Field mustard	plastid	67.32	66.02
Bra001683.1-P	Field mustard	plastid	63.64	63.48
Solyc03g098000.2.1	Tomato	plastid	58.48	61.66
GSMUA_Achr1P22120_001	Banana	plastid	56.27	59.64
VIT_17s0119g00070.t01	Wine grape	plastid	61.18	59.43
KRH60570	Soybean	plastid	57.74	58.75
PGSC0003DMT400083980	Potato	plastid	60.69	58.67
KRH41876	Soybean	plastid	57.74	58.17
KRH48705	Soybean	plastid	57.74	57.6
KXG37708	Sorghum	plastid	58.23	57.11
KRH39016	Soybean	plastid	57.99	57.0
GSMUA_Achr8P30820_001	Banana	mitochondrion	57.74	56.49
Zm00001d013411_P002	Maize	plastid	55.53	54.33
HORVU4Hr1G008300.1	Barley	plastid	54.05	53.92
Zm00001d033787_P001	Maize	plastid	56.02	53.9
TraesCS4B01G050500.1	Wheat	plastid	53.81	53.55
TraesCS4D01G050700.1	Wheat	plastid	53.81	53.41
TraesCS4A01G264500.1	Wheat	plastid	54.05	53.27
VIT_15s0024g00690.t01	Wine grape	plastid	50.61	50.12
Os03t0717900-01	Rice	cytosol	55.28	49.45
Bra033851.1-P	Field mustard	plastid	39.56	40.15
Bra037475.1-P	Field mustard	plastid	28.26	33.82
Bra029638.1-P	Field mustard	plastid	28.99	32.07
Bra040372.1-P	Field mustard	plastid	27.27	31.62

Protein Annotations

EnsemblPlants:Bra032255.1	EnsemblPlants:Bra032255.1-P	EnsemblPlantsGene:Bra032255	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808
PANTHER:PTHR31808:SF4	PFAM:PF05542	UniParc:UPI0002547CAC	UniProt:M4ETX3	MapMan:35.1	:

Description

AT1G48450 (E=1e-183) | unknown protein

Coordinates

chrA05:+:12269816..12271198

Molecular Weight (calculated)

45377.7 Da

IEP (calculated)

6.873

GRAVY (calculated)

-0.394

Length

407 amino acids

Sequence
(BLAST)

001: MAASFAQSPS FLRRNASGSI LLTASSPGFI RFSSGPQFRH RHSTCLKLSR PSQSRTTSLK SRRSFVVKSS ASDSIAPLEL KSPVGQFLSQ ILVSHPHLVP
101: AAVEQQLEQL QTDREAEEQI KDSSSSLPGT DIVLYRRIAE VKEKERRKAL EEILYALVVQ KFMDANVSLV PSITSSSGRV DTWPTQDGEL EQLHSPEVYE
201: MIQNHLSIIL KNREGDLSTV AQISKLGVGQ VYAASVMYGY FLKRIDQRFQ LEKTMKILPG GSDEGETSIE QAGRETERSF YEEAEETYQA VSSNQEVGGI
301: NASGGSSSET KQSRLKTYVM SFDGETLQRY ATIRSREAVG IIEKHTEALF GRPEIVITPQ GIDSSKDEHM KISFKGLKRL VLEAVTFGSF LWDVESHVDS
401: RYHFVLN

Best Arabidopsis Sequence Match ( AT1G48450.1 )
(BLAST)

001: MDAVAANLFQ SPSLLRQTSE RLIFSTPNCP GFMRISSGPQ FRLRQNSSLK FSRPFQSGTT CVKSRRSFVV KASASGDAST ESIAPLQLKS PVGQFLSQIL
101: VSHPHLVPAA VEQQLEQLQI DRDAEEQSKD ASSVLGTDIV LYRRIAEVKE KERRRALEEI LYALVVQKFM DANVTLVPSI TSSSADPSGR VDTWPTLDGE
201: LERLHSPEVY EMIQNHLSII LKNRTDDLTA VAQISKLGVG QVYAASVMYG YFLKRIDQRF QLEKTMRILP GGSDEGETSI EQAGRDVERN FYEEAEETYQ
301: AVSSNQDVGS FVGGINASGG FSSDMKQSRL KTYVMSFDGE TLQRYATIRS RESVGIIEKH TEALFGRPEI VITPQGTIDS SKDEHIKISF KGLKRLVLEA
401: VTFGSFLWDV ESHVDSRYHF VLN

Arabidopsis Description

Alanine-tRNA ligase, putative (DUF760) [Source:UniProtKB/TrEMBL;Acc:Q9LP80]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.