CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35549	Canola	plastid	98.0	97.76
AT1G32160.1	Thale cress	nucleus, plastid	81.3	80.3
VIT_02s0012g02240.t01	Wine grape	plastid	57.11	56.82
GSMUA_Achr8P14670_001	Banana	cytosol	45.64	55.96
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.61	54.93
Solyc08g076090.2.1	Tomato	nucleus, plastid	53.87	53.73
KRH39607	Soybean	golgi	54.36	53.43
PGSC0003DMT400024037	Potato	plastid	51.87	51.74
TraesCS2D01G443500.1	Wheat	plastid	44.64	45.66
Os04t0596300-01	Rice	plastid	45.89	45.43
EES12774	Sorghum	plastid	45.14	45.02
Zm00001d026211_P001	Maize	plastid	46.38	44.82
CDX82345	Canola	plastid	42.14	41.63
CDY23684	Canola	plastid	40.65	40.05
CDX95820	Canola	plastid	41.4	40.0
CDX92162	Canola	plastid	41.15	39.76
CDX75937	Canola	plastid	40.9	39.61
CDY58279	Canola	plastid	40.9	38.59
CDY19857	Canola	nucleus	9.48	36.54
HORVU2Hr1G102880.1	Barley	cytosol, nucleus, plastid	44.89	36.44
CDY28064	Canola	plastid	27.43	29.81
CDY34905	Canola	plastid	25.19	29.53
CDX86293	Canola	plastid	24.94	29.41
CDX85350	Canola	plastid	24.44	28.82
CDY60823	Canola	plastid	25.19	28.69
CDY24630	Canola	plastid	26.68	28.53

Protein Annotations

EnsemblPlants:CDY29940	EnsemblPlantsGene:GSBRNA2T00044440001	InterPro:At3g17800-like	InterPro:DUF760	ncoils:Coil	PANTHER:PTHR31808
PANTHER:PTHR31808:SF6	PFAM:PF05542	ProteinID:CDY29940	ProteinID:CDY29940.1	SEG:seg	UniParc:UPI0004EDEE3F
UniProt:A0A078GTU6	MapMan:35.1	:	:	:	:

Description

BnaC05g28960DBnaC05g28960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTU6]

Coordinates

chrLK032246:+:446795..448422

Molecular Weight (calculated)

45326.7 Da

IEP (calculated)

5.507

GRAVY (calculated)

-0.476

Length

401 amino acids

Sequence
(BLAST)

001: MQAIGSYGCL CFKHYHSLSK LLSPPSTSPS LLPQRCHSFC IPKLGSSSNN AENGRGRGVT VRASGEDDNF APIAPVELES PVGQLLDQIL RTHPHLLPVT
101: VDQQLDKLST ENENLKAESS SSQDSLSKRI SEVKDKEKRK TLAEIIYCLV VHRFVEKEIS MIPQIKPTSD PAGRIDLWPN QEEKLEVIHS AEAFEMIQSH
201: LSSVLGDRTA VGPLSSIVQI SKIKLGKLYA ASVMYGYFLR RIDQRYQLER TMNTLPKRPD KTRERYEEPS PPYPLWDPDS LIRIQPEEYD PDEYAIQRNE
301: DESSSYGLRS YVTYLDSDTL QRYATIRSKE AMSLIEKQTQ ALFGRPDIRI LEDGKLDTSN DEVLSLSFSG LATLVLEAVT FGSFLWDAES YVESKYHFLK
401: A

Best Arabidopsis Sequence Match ( AT1G32160.1 )
(BLAST)

001: MQAIGSSHGR RLCFNHYLSD SFSKFLSPSS SPSLLPQRCH SFCIPKLGSS STNENGRGRS VTVRASGDED SNENFAPLAP VELESPVGQL LEQILRTHPH
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA

Arabidopsis Description

At1g32160/F3C3_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVR1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.