Factsheet for PGSC0003DMT400084201

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 2
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050120.2.1	Tomato	plastid	99.14	99.14
PGSC0003DMT400000961	Potato	cytosol	85.32	83.87
PGSC0003DMT400077452	Potato	cytosol	82.21	80.54
KXG33287	Sorghum	cytosol	81.17	79.26
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	25.56	78.72
TraesCS3A01G285900.2	Wheat	cytosol	80.14	78.11
PGSC0003DMT400068027	Potato	plastid	79.45	71.88
Os01t0723400-04	Rice	plastid	78.93	71.07
PGSC0003DMT400006726	Potato	plastid	78.07	70.41
TraesCS3D01G285700.2	Wheat	plastid	80.14	70.2
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	77.2	70.06
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	80.31	65.77
PGSC0003DMT400043836	Potato	cytosol	27.12	65.42
VIT_16s0039g00580.t01	Wine grape	cytosol	5.35	60.78
VIT_00s0342g00030.t01	Wine grape	cytosol	5.7	53.23
PGSC0003DMT400008389	Potato	mitochondrion	24.35	53.21
VIT_00s0183g00140.t01	Wine grape	cytosol	7.08	52.56
VIT_16s0039g01050.t01	Wine grape	cytosol	5.7	52.38
VIT_00s0279g00080.t01	Wine grape	cytosol	12.61	51.05
VIT_16s0115g00440.t01	Wine grape	cytosol	12.44	50.35
PGSC0003DMT400000066	Potato	mitochondrion	39.55	36.52

Protein Annotations

EntrezGene:102580952	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	EMBL:AB061256	ProteinID:BAC23042
ProteinID:BAC23042.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	UniProt:M1D7J7	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf
InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	EnsemblPlantsGene:PGSC0003DMG400033874
PGSC:PGSC0003DMG400033874	EnsemblPlants:PGSC0003DMT400084201	PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406
PANTHER:PTHR23406:SF36	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0002956C2E
RefSeq:XP_006345575.1	SEG:seg	:	:	:	:

Description

Malic enzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400033874]

Coordinates

chr5:+:44298708..44304105

Molecular Weight (calculated)

64102.2 Da

IEP (calculated)

5.856

GRAVY (calculated)

-0.126

Length

579 amino acids

Sequence
(BLAST)

001: MESALKDLST PTGGVEDVYG EDCATEDQCI TPWTIAVSSG YNLLRDPRYN KGLAFTERER DAHYLRGLLP PVISSQELQE KKLMQSIRQY DVPLHKYVAM
101: MELEERNERL FYKLLIDNVE ELLPIVYTPT VGEACQKYGS IFKRPQGLYI SLNEKGRILE VLKNWPEKSI QVIVVTDGER ILGLGDLGCQ GMGIPVGKLA
201: LYTALGGVRP SACLPITIDV GTNNEKLLND EFYIGLKQRR ATGQEYYDFL HEFMSAVKQN YGEKILVQFE DFANHNAFEL LAKYRTSHLV FNDDIQGTAS
301: VVLAGLIASL KLLGGALCDH TFLFLGAGEA GTGIAELIAL EISNKTKIPV EETRKKIWLV DSKGLIVSGR KETLQAFKKP WAHEHEPVNN LLDAVKAVKP
401: TVLIGTSGTG RTFTKEVVEA MACMNKRPLI MALSNPTSQA ECTAEEAYTW SEGRVVFASG SPFPSFEYDG KLNIPGQANN CYIFPGFGFG LVMSGTIRVH
501: DDMLLAASEA LAAQVTEEHY AKGMIYPPFA DIRKISAHIA ASVAAKAYEL GVATRLPQPA DLVKYAESCM YTPNYRSYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.