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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 2
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc06g007550.1.1
Solyc06g007560.1.1
Solyc09g057580.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G79750.1 Solyc06g007550.1.1 AT3G07310.1 21798944
AT1G79750.1 Solyc06g007560.1.1 AT3G07310.1 21798944
AT1G79750.1 Solyc09g057580.2.1 AT3G07310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH13473 Soybean plastid 58.33 34.15
KRH01213 Soybean cytosol, plastid 70.83 17.96
Solyc03g120990.2.1 Tomato plastid 83.33 9.35
Solyc12g044600.2.1 Tomato plastid 76.39 8.59
KRH47214 Soybean mitochondrion 68.06 8.52
Solyc05g050120.2.1 Tomato plastid 66.67 8.29
KRH09931 Soybean mitochondrion, plastid 73.61 8.24
Solyc12g008430.1.1 Tomato plastid 66.67 8.15
Solyc08g066360.2.1 Tomato nucleus, plastid, unclear 66.67 8.12
KRH23402 Soybean nucleus 72.22 8.04
AT1G79750.1 Thale cress plastid 68.06 7.59
CDX85926 Canola plastid 63.89 7.34
Bra003738.1-P Field mustard plastid 63.89 7.24
CDX68115 Canola plastid 63.89 7.04
KRH44278 Soybean plastid 62.5 7.02
Solyc08g013860.2.1 Tomato plastid 31.94 3.67
Solyc01g094200.2.1 Tomato plastid 23.61 2.83
HORVU5Hr1G053200.1 Barley endoplasmic reticulum, extracellular 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc08g066290.2.1EnsemblPlantsGene:Solyc08g066290.2Gene3D:3.40.50.720InterPro:NAD(P)-bd_dom_sfPANTHER:PTHR23406PANTHER:PTHR23406:SF39
SUPFAM:SSF51735UniParc:UPI000276BABEUniProt:K4CLK6MapMan:35.1::
Description
No Description!
Coordinates
chr8:+:54789572..54790684
Molecular Weight (calculated)
8065.6 Da
IEP (calculated)
7.408
GRAVY (calculated)
-0.340
Length
72 amino acids
Sequence
(BLAST)
1: MCEVAEALAA ETNQENLEKG LIYQPFANTR KISAHIAAKA YELGLATRLP QPHNLVAYAE SCMYSPSYRS YR
Best Arabidopsis Sequence Match ( AT5G25880.1 )
(BLAST)
001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG LASNLPRPKD LVKMAESCMY SPVYRNFR
Arabidopsis Description
NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.