Factsheet for Solyc08g013860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 8
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g00500.t01	Wine grape	mitochondrion	85.3	85.44
Bra037210.1-P	Field mustard	mitochondrion	84.19	85.28
CDY37211	Canola	mitochondrion	84.03	85.11
CDX81448	Canola	mitochondrion	83.87	84.95
KRH66385	Soybean	mitochondrion	83.55	84.08
AT2G13560.1	Thale cress	mitochondrion	83.23	83.63
GSMUA_Achr7P06830_001	Banana	mitochondrion	80.51	80.25
Zm00001d021546_P003	Maize	mitochondrion	78.75	79.64
Os07t0496200-01	Rice	mitochondrion	79.07	79.58
KXG36268	Sorghum	mitochondrion	78.75	79.26
TraesCS2B01G256800.1	Wheat	mitochondrion, unclear	78.59	78.97
TraesCS2D01G234500.3	Wheat	mitochondrion	78.59	78.97
TraesCS2A01G237000.1	Wheat	mitochondrion	78.27	78.65
HORVU2Hr1G050980.2	Barley	mitochondrion, plastid	78.75	75.04
Solyc01g094200.2.1	Tomato	plastid	62.14	64.73
Solyc05g050120.2.1	Tomato	plastid	38.5	41.62
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	38.66	40.95
Solyc12g008430.1.1	Tomato	plastid	37.54	39.9
Solyc03g120990.2.1	Tomato	plastid	39.3	38.32
Solyc12g044600.2.1	Tomato	plastid	39.14	38.28
Solyc08g066290.2.1	Tomato	cytosol	3.67	31.94

Protein Annotations

MapMan:2.3.9	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006090
GO:GO:0006108	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016491	GO:GO:0042803
GO:GO:0046872	GO:GO:0050897	GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	UniProt:K4CJ21
InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406
PANTHER:PTHR23406:SF53	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223	EnsemblPlantsGene:Solyc08g013860.2
EnsemblPlants:Solyc08g013860.2.1	UniParc:UPI000276AEA2	SEG:seg	:	:	:

Description

Malic enzyme [Source:UniProtKB/TrEMBL;Acc:K4CJ21]

Coordinates

chr8:-:3298564..3322136

Molecular Weight (calculated)

69961.2 Da

IEP (calculated)

6.028

GRAVY (calculated)

-0.191

Length

626 amino acids

Sequence
(BLAST)

001: MANFSNQMRL SSTILRRLHQ RVAAAVNSSS SRNFTTTEGH RPTIVHKRSL DILHDPWFNK GTAFSFTERD RLHIRGLLPP NVMSFEQQIA RFMADLKRLE
101: VQARDGPSDP YVLAKWRILN RLHDRNETLY YKVLMENIEE YAPIVYTPTV GLVCQKYSGL FRRPRGMYFS AEDRGEMMSM VYNWPADQVD MIVVTDGSRI
201: LGLGDLGVQG IGIAIGKLDL YVAAAGINPQ RVLPVMIDVG TDNENLLKDP LYLGLQEHRL DGEKYIEVID EFMEAVFTRW PHVIVQFEDF QSKWAFKLLQ
301: RYRNNYRMFN DDVQGTAGVA IAGLLGAVRA QGRPMIDFPK MKIVVAGAGS AGIGVLNAAR KTMARMLGNT EVAFESARSQ FWVVDAKGLI TEARENVDPD
401: ARPFARKIKE IERQGLSEGA TLAEVVREVK PDVLLGLSAC GGLFSKEVLE ALKHSTSTRP AIFPMSNPTR NAECTPEEAF SVLGENIIFA SGSPFKDVDL
501: GNGHVGHCNQ ANNMFLFPGI GLGTLLSGSR IVSDGMLQAA AECLAAYMTE EEVLKGIIYP SISRIRDITK EVAAAVVKEA IEEDLAEGYR EMDSRELRKL
601: DEAQISEFVE NNMWSPDYPT LVYKKD

Best Arabidopsis Sequence Match ( AT2G13560.1 )
(BLAST)

001: MGIANKLRLS SSSLSRILHR RILYSSAVRS FTTSEGHRPT IVHKQGLDIL HDPWFNKGTA FTMTERNRLD LRGLLPPNVM DSEQQIFRFM TDLKRLEEQA
101: RDGPSDPNAL AKWRILNRLH DRNETMYYKV LINNIEEYAP IVYTPTVGLV CQNYSGLFRR PRGMYFSAED RGEMMSMVYN WPAEQVDMIV VTDGSRILGL
201: GDLGVHGIGI AVGKLDLYVA AAGINPQRVL PVMIDVGTNN EKLRNDPMYL GLQQRRLEDD DYIDVIDEFM EAVYTRWPHV IVQFEDFQSK WAFKLLQRYR
301: CTYRMFNDDV QGTAGVAIAG LLGAVRAQGR PMIDFPKMKI VVAGAGSAGI GVLNAARKTM ARMLGNTETA FDSAQSQFWV VDAQGLITEG RENIDPEAQP
401: FARKTKEMER QGLKEGATLV EVVREVKPDV LLGLSAVGGL FSKEVLEAMK GSTSTRPAIF AMSNPTKNAE CTPQDAFSIL GENMIFASGS PFKNVEFGNG
501: HVGHCNQGNN MYLFPGIGLG TLLSGAPIVS DGMLQAASEC LAAYMSEEEV LEGIIYPPIS RIRDITKRIA AAVIKEAIEE DLVEGYREMD AREIQKLDEE
601: GLMEYVENNM WNPEYPTLVY KDD

Arabidopsis Description

NAD-ME1NAD-dependent malic enzyme 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIU0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.