Factsheet for TraesCS6A01G178000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 4
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80300.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G206800.1	Wheat	golgi	98.54	97.9
TraesCS6D01G166400.1	Wheat	mitochondrion, plastid	97.89	97.42
HORVU6Hr1G036830.1	Barley	plastid	97.24	96.61
Os02t0208100-01	Rice	plastid	86.36	84.44
KXG29763	Sorghum	plastid	85.55	81.71
Zm00001d016411_P001	Maize	plastid	85.39	80.31
GSMUA_Achr7P08430_001	Banana	plastid	65.58	71.38
TraesCS3A01G233300.1	Wheat	plastid	71.43	70.74
GSMUA_Achr2P16990_001	Banana	plastid	67.21	68.32
GSMUA_Achr10P...	Banana	mitochondrion	66.88	67.87
Bra003560.1-P	Field mustard	plastid	67.69	67.69
CDY57697	Canola	plastid	67.69	67.69
CDX87299	Canola	mitochondrion, plastid	67.37	67.59
Bra035190.1-P	Field mustard	mitochondrion, plastid	67.37	67.59
CDX79394	Canola	plastid	67.53	67.53
CDY39988	Canola	mitochondrion, plastid	67.21	67.32
KRH44405	Soybean	endoplasmic reticulum	68.18	67.31
KRH47502	Soybean	mitochondrion	67.53	66.77
Bra026126.1-P	Field mustard	plastid	65.91	66.67
CDY36568	Canola	mitochondrion	65.91	66.56
Bra016656.1-P	Field mustard	plastid	65.91	66.56
VIT_09s0002g05710.t01	Wine grape	plastid	67.05	66.51
CDX83974	Canola	plastid	65.75	66.5
CDY39658	Canola	mitochondrion	66.23	66.45
CDX96838	Canola	plastid	65.91	66.34
PGSC0003DMT400014304	Potato	plastid	67.21	66.13
Solyc03g119970.2.1	Tomato	plastid	67.05	66.08
AT1G80300.1	Thale cress	plastid	66.72	65.87
AT1G15500.1	Thale cress	mitochondrion	66.07	65.86
KRH23529	Soybean	endoplasmic reticulum	65.58	65.69
PGSC0003DMT400073724	Potato	mitochondrion, plastid	67.05	65.45
Solyc12g042950.1.1	Tomato	mitochondrion, plastid	66.72	65.34
KRH09791	Soybean	extracellular	65.42	65.32
Solyc08g066920.1.1	Tomato	cytosol	12.01	37.56

Protein Annotations

EnsemblPlants:TraesCS6A01G178000.1	EnsemblPlantsGene:TraesCS6A01G178000	GO:GO:0003674	GO:GO:0005215	GO:GO:0005471	GO:GO:0005575
GO:GO:0006810	GO:GO:0006862	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:ADP_ATP_car
PANTHER:PTHR31187	PANTHER:PTHR31187:SF3	PFAM:PF03219	SEG:seg	TIGRFAMs:TIGR00769	TMHMM:TMhelix
MapMan:24.2.2.14	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:199806953..199809936

Molecular Weight (calculated)

66941.9 Da

IEP (calculated)

10.103

GRAVY (calculated)

0.409

Length

616 amino acids

Sequence
(BLAST)

001: MESGLVASHR LRLPALPFAA HAHLLRHRRL AATPLRLPTT PTPLRQPAAL PLRPCLRPPR AASVASPAPA PGDAPDNSRK FLGVDALTLK KIVPLGLMFF
101: CILFNYTILR DTKDVLVVTA KGSSAEIIPF LKTWVNLPMA IGFMLLYSKL ADVLSKEALF YTVIFPFIAF FGVFGYVLYP MRDAIHPTAL ADRLLASLGP
201: SFMGPVAILR VWSFCLFYVM AELWGSVVIS VLFWGFANQI TTVEEAKEFY PLFGLGANVA LIFSGRTVKY FSNMRQNLGP GVDGWAISLK GMMSIVVVLG
301: FVIAGIYWGV NKYVIDKTSL PVERKKKNKP KLSMGESLKV LVSSRYVRDL ATLVVAYGIS INLVEVTWKS KLKAQFPSPN EYSSFMGDFS TATGIATFTM
401: MLLGRLILRK FGWGVAATIT PAVLLVTGVG FFSLLLFGEP LTPLLATFGM TPLLAAVFVG ALQNIFSKSA KYSLFDPCKE MAYIPLDEDM KVKGKAAIDV
501: VCNPLGKSGG ALIQQFMILS FGSLANSTPY LGGILLVIVI AWLGAVRSLD SQFSPLAKQD LEREQKLKAE AVETTAQVVG TGNGSLQENV ASTNGTVIKQ
601: SQEPEITAPE KSGKQS

Best Arabidopsis Sequence Match ( AT1G80300.1 )
(BLAST)

001: MEAVIQTRGL LSLPTKPIGV RSQLQPSHGL KQRLFAAKPR NLHGLSLSFN GHKKFQTFEP TLHGISISHK ERSTEFICKA EAAAAGDGAV FGEGDSAAVV
101: ASPKIFGVEV ATLKKIIPLG LMFFCILFNY TILRDTKDVL VVTAKGSSAE IIPFLKTWVN LPMAIGFMLL YTKLSNVLSK KALFYTVIVP FIIYFGAFGF
201: VMYPLSNYIH PEALADKLLT TLGPRFMGPI AILRIWSFCL FYVMAELWGS VVVSVLFWGF ANQITTVDEA KKFYPLFGLG ANVALIFSGR TVKYFSNLRK
301: NLGPGVDGWA VSLKAMMSIV VGMGLAICLL YWWVNRYVPL PTRSKNKKEK PKMGTMESLK FLVSSPYIRD LATLVVAYGI SINLVEVTWK SKLKAQFPSP
401: NEYSAFMGDF STCTGVATFT MMLLSQYVFN KYGWGVAAKI TPTVLLLTGV AFFSLILFGG PFAPLVAKLG MTPLLAAVYV GALQNIFSKS AKYSLFDPCK
501: EMAYIPLDED TKVKGKAAID VVCNPLGKSG GALIQQFMIL SFGSLANSTP YLGMILLVIV TAWLAAAKSL EGQFNSLRSE EELEKEMERA SSVKIPVVSQ
601: DESGNGSLGE SPSSSPEKSA PTNL

Arabidopsis Description

AATP1ADP,ATP carrier protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39002]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.