CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80300.1	CDY42827	AT2G42580.1	19000166
AT1G80300.1	CDY51514	AT2G42580.1	19000166
AT1G80300.1	CDY55390	AT2G42580.1	19000166
AT1G80300.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87299	Canola	mitochondrion, plastid	98.21	98.37
Bra035190.1-P	Field mustard	mitochondrion, plastid	97.4	97.56
CDY57697	Canola	plastid	93.98	93.83
CDX79394	Canola	plastid	93.66	93.51
AT1G80300.1	Thale cress	plastid	93.33	91.99
CDY36568	Canola	mitochondrion	87.97	88.69
CDY39658	Canola	mitochondrion	88.29	88.44
CDX83974	Canola	plastid	86.67	87.52
CDX96838	Canola	plastid	86.18	86.6
KRH09791	Soybean	extracellular	79.35	79.09
KRH23529	Soybean	endoplasmic reticulum	78.86	78.86
KRH44405	Soybean	endoplasmic reticulum	79.67	78.53
KRH47502	Soybean	mitochondrion	79.35	78.33
VIT_09s0002g05710.t01	Wine grape	plastid	78.37	77.62
PGSC0003DMT400014304	Potato	plastid	78.54	77.16
Solyc03g119970.2.1	Tomato	plastid	78.37	77.12
HORVU7Hr1G057290.1	Barley	endoplasmic reticulum, golgi	5.85	76.6
Solyc12g042950.1.1	Tomato	mitochondrion, plastid	77.4	75.68
PGSC0003DMT400073724	Potato	mitochondrion, plastid	77.24	75.28
TraesCS6A01G178000.1	Wheat	golgi	67.32	67.21
TraesCS6D01G166400.1	Wheat	mitochondrion, plastid	67.15	66.72
TraesCS6B01G206800.1	Wheat	golgi	67.15	66.61
TraesCS3A01G233300.1	Wheat	plastid	67.15	66.4
TraesCS3B01G262600.1	Wheat	plastid	67.15	66.4
Os02t0208100-01	Rice	plastid	67.97	66.35
GSMUA_Achr7P08430_001	Banana	plastid	60.65	65.9
Os01t0647100-01	Rice	plastid	68.62	65.73
EES03353	Sorghum	plastid	67.64	65.41
KXG29763	Sorghum	plastid	67.15	64.03
GSMUA_Achr10P...	Banana	mitochondrion	62.6	63.43
GSMUA_Achr2P16990_001	Banana	plastid	62.11	63.04
TraesCS3D01G219900.1	Wheat	golgi, unclear	67.32	61.79
Zm00001d039684_P001	Maize	cytosol	8.62	48.18

Protein Annotations

MapMan:24.2.2.14	GO:A0A078HTB2	UniProt:A0A078HTB2	InterPro:ADP_ATP_car	EnsemblPlants:CDY39988	ProteinID:CDY39988
ProteinID:CDY39988.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005215	GO:GO:0005471	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006862	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0015866	GO:GO:0015867
GO:GO:0016020	GO:GO:0016021	GO:GO:0031969	EnsemblPlantsGene:GSBRNA2T00068880001	PFAM:PF03219	PANTHER:PTHR31187
PANTHER:PTHR31187:SF3	TIGRFAMs:TIGR00769	TMHMM:TMhelix	UniParc:UPI0004EDDED9	SEG:seg	:

Description

BnaC06g40660DADP,ATP carrier protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTB2]

Coordinates

chrLK032461:-:270622..273263

Molecular Weight (calculated)

67077.9 Da

IEP (calculated)

9.888

GRAVY (calculated)

0.400

Length

615 amino acids

Sequence
(BLAST)

001: MATVIQTRGL LSLPAKPIGV RSLLQPSHGL KHRLFASKPR NPPALSLSSN GHQKFQSFEP TLPGISISHK ARSTEFICKA EAASAGEGDT AAISASPKIF
101: GVEVTTLKKI IPLGLMFFCI LFNYTILRDT KDVLVVTAKG SSAEIIPFLK TWVNLPMAIG FMLLYTKLSN VLSKRALFYT VIIPFILYFG AFGFVMYPLS
201: NYIHPEALAD KLLATLGPRF MGPLAILRIW SFCLFYVMAE LWGSVVISVL FWGFANQITT VDEAKKFYPL FGLGANVALI FSGRTVKYFS NLRKNLGPGV
301: DGWAVSLKAM MSIVVGMGLA ICFLYWWVNT YVPLPARSQK KKNKPKMGTI ESLKFLVSSP YIRDLATLVV AYGISINLVE VTWKSKLKAQ FPSPNEYSAF
401: MGDFSTCTGI ATFTMMLLSQ YVFDKYGWGV AAKITPTVLL LTGVAFFSLI LFGGPFAPLV AKLGMTPLLA AVYVGALQNI FSKSAKYSLF DPCKEMAYIP
501: LDEDTKVKGK AAIDVVCNPL GKSGGALIQQ FMILSFGSLA NSTPYLGMIL LVIVTAWLAA AKSLEGQFNA LRSEEELEKE MERASSVKIP VVSQDEGSLG
601: ESSSSSPEKS APTNI

Best Arabidopsis Sequence Match ( AT1G80300.1 )
(BLAST)

001: MEAVIQTRGL LSLPTKPIGV RSQLQPSHGL KQRLFAAKPR NLHGLSLSFN GHKKFQTFEP TLHGISISHK ERSTEFICKA EAAAAGDGAV FGEGDSAAVV
101: ASPKIFGVEV ATLKKIIPLG LMFFCILFNY TILRDTKDVL VVTAKGSSAE IIPFLKTWVN LPMAIGFMLL YTKLSNVLSK KALFYTVIVP FIIYFGAFGF
201: VMYPLSNYIH PEALADKLLT TLGPRFMGPI AILRIWSFCL FYVMAELWGS VVVSVLFWGF ANQITTVDEA KKFYPLFGLG ANVALIFSGR TVKYFSNLRK
301: NLGPGVDGWA VSLKAMMSIV VGMGLAICLL YWWVNRYVPL PTRSKNKKEK PKMGTMESLK FLVSSPYIRD LATLVVAYGI SINLVEVTWK SKLKAQFPSP
401: NEYSAFMGDF STCTGVATFT MMLLSQYVFN KYGWGVAAKI TPTVLLLTGV AFFSLILFGG PFAPLVAKLG MTPLLAAVYV GALQNIFSKS AKYSLFDPCK
501: EMAYIPLDED TKVKGKAAID VVCNPLGKSG GALIQQFMIL SFGSLANSTP YLGMILLVIV TAWLAAAKSL EGQFNSLRSE EELEKEMERA SSVKIPVVSQ
601: DESGNGSLGE SPSSSPEKSA PTNL

Arabidopsis Description

AATP1ADP,ATP carrier protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39002]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.