CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80300.1	CDY42827	AT2G42580.1	19000166
AT1G80300.1	CDY51514	AT2G42580.1	19000166
AT1G80300.1	CDY55390	AT2G42580.1	19000166
AT1G80300.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57697	Canola	plastid	98.86	98.86
Bra003560.1-P	Field mustard	plastid	98.7	98.7
CDX87299	Canola	mitochondrion, plastid	94.16	94.46
CDY39988	Canola	mitochondrion, plastid	93.51	93.66
AT1G80300.1	Thale cress	plastid	92.53	91.35
CDY36568	Canola	mitochondrion	88.47	89.34
CDY39658	Canola	mitochondrion	88.64	88.93
CDX83974	Canola	plastid	87.18	88.18
CDX96838	Canola	plastid	87.18	87.75
KRH44405	Soybean	endoplasmic reticulum	80.52	79.49
KRH47502	Soybean	mitochondrion	79.87	78.97
KRH09791	Soybean	extracellular	78.57	78.44
VIT_09s0002g05710.t01	Wine grape	plastid	78.73	78.1
KRH23529	Soybean	endoplasmic reticulum	77.92	78.05
PGSC0003DMT400014304	Potato	plastid	79.06	77.8
Solyc03g119970.2.1	Tomato	plastid	78.73	77.6
HORVU7Hr1G057290.1	Barley	endoplasmic reticulum, golgi	5.84	76.6
Solyc12g042950.1.1	Tomato	mitochondrion, plastid	77.92	76.31
PGSC0003DMT400073724	Potato	mitochondrion, plastid	77.76	75.91
TraesCS6A01G178000.1	Wheat	golgi	67.53	67.53
TraesCS6D01G166400.1	Wheat	mitochondrion, plastid	67.37	67.04
TraesCS6B01G206800.1	Wheat	golgi	67.37	66.94
TraesCS3A01G233300.1	Wheat	plastid	67.21	66.56
Os02t0208100-01	Rice	plastid	68.02	66.51
TraesCS3B01G262600.1	Wheat	plastid	67.05	66.4
Os01t0647100-01	Rice	plastid	68.51	65.73
EES03353	Sorghum	plastid	67.86	65.72
GSMUA_Achr7P08430_001	Banana	plastid	60.06	65.37
KXG29763	Sorghum	plastid	67.69	64.65
GSMUA_Achr10P...	Banana	mitochondrion	62.18	63.1
GSMUA_Achr2P16990_001	Banana	plastid	62.01	63.04
TraesCS3D01G219900.1	Wheat	golgi, unclear	67.05	61.64
Zm00001d039684_P001	Maize	cytosol	8.77	49.09

Protein Annotations

EnsemblPlants:CDX79394	EnsemblPlantsGene:GSBRNA2T00132102001	GO:A0A078CTN0	GO:GO:0003674	GO:GO:0005215	GO:GO:0005471
GO:GO:0005575	GO:GO:0006810	GO:GO:0006862	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
InterPro:ADP_ATP_car	PANTHER:PTHR31187	PANTHER:PTHR31187:SF3	PFAM:PF03219	ProteinID:CDX79394	ProteinID:CDX79394.1
SEG:seg	TIGRFAMs:TIGR00769	TMHMM:TMhelix	UniParc:UPI0004EB6E8F	MapMan:24.2.2.14	:

Description

BnaC06g19090D

Coordinates

chrLK031817:-:1831386..1834344

Molecular Weight (calculated)

67475.6 Da

IEP (calculated)

9.918

GRAVY (calculated)

0.378

Length

616 amino acids

Sequence
(BLAST)

001: MEAAIQTRGI LSLPAKPIGA RRSLLHPSHG LKHRLFSSKP RTPPALSLSF KKAQSFDPKI SISHKERTTE FICKAEADGG ALLNEGDTAA IVPSPKIFGV
101: EVTTLKKIIP LGLMFFCILF NYTILRDTKD VLVVTAKGSS AEIIPFLKTW VNLPMAIGFM LLYTKLSNVL SKKALFYTVI IPFIIYFGAF GFVMYPLSNY
201: IHPDALADKL LAALGPRFMG PLAILRIWSF CLFYVMAELW GSVVISVLFW GFANQITTVD EAKKFYPLFG LGANVALIFS GRTVKYFSNL RKNLGPGVDG
301: WAVSLKAMMS IVVGMGLAIC FLYWWVNRYV PLPTRSLKKK NKPKMGTMES LKFLVSSPYI RDLATLVVAY GISINLVEVT WKSKLKAQFP SPNEYSAFMG
401: DFSTCTGIAT FTMMLLSQYV FDKYGWGVAA KITPTVLLLT GVAFFSLILF GGPFAPLVAK LGMTPLLAAV YVGALQNIFS KSAKYSLFDP CKEMAYIPLD
501: EDTKVKGKAA IDVVCNPLGK SGGALIQQFM ILSFGSLANS TPYLGMILLV IVTAWLAAAK SLEGQFNALR SEEELEKEME RASSVKIPVV SQEEGGNGSL
601: GESTSSWPEK SAPTNI

Best Arabidopsis Sequence Match ( AT1G80300.1 )
(BLAST)

001: MEAVIQTRGL LSLPTKPIGV RSQLQPSHGL KQRLFAAKPR NLHGLSLSFN GHKKFQTFEP TLHGISISHK ERSTEFICKA EAAAAGDGAV FGEGDSAAVV
101: ASPKIFGVEV ATLKKIIPLG LMFFCILFNY TILRDTKDVL VVTAKGSSAE IIPFLKTWVN LPMAIGFMLL YTKLSNVLSK KALFYTVIVP FIIYFGAFGF
201: VMYPLSNYIH PEALADKLLT TLGPRFMGPI AILRIWSFCL FYVMAELWGS VVVSVLFWGF ANQITTVDEA KKFYPLFGLG ANVALIFSGR TVKYFSNLRK
301: NLGPGVDGWA VSLKAMMSIV VGMGLAICLL YWWVNRYVPL PTRSKNKKEK PKMGTMESLK FLVSSPYIRD LATLVVAYGI SINLVEVTWK SKLKAQFPSP
401: NEYSAFMGDF STCTGVATFT MMLLSQYVFN KYGWGVAAKI TPTVLLLTGV AFFSLILFGG PFAPLVAKLG MTPLLAAVYV GALQNIFSKS AKYSLFDPCK
501: EMAYIPLDED TKVKGKAAID VVCNPLGKSG GALIQQFMIL SFGSLANSTP YLGMILLVIV TAWLAAAKSL EGQFNSLRSE EELEKEMERA SSVKIPVVSQ
601: DESGNGSLGE SPSSSPEKSA PTNL

Arabidopsis Description

AATP1ADP,ATP carrier protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39002]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.