CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 8
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

extracellular: 25724908

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80300.1	KRH22291	AT2G42580.1	19000166
AT1G80300.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23529	Soybean	endoplasmic reticulum	96.11	96.42
KRH47502	Soybean	mitochondrion	85.74	84.91
KRH44405	Soybean	endoplasmic reticulum	85.74	84.78
VIT_09s0002g05710.t01	Wine grape	plastid	82.66	82.13
Solyc03g119970.2.1	Tomato	plastid	82.01	80.96
PGSC0003DMT400014304	Potato	plastid	81.69	80.51
CDY39988	Canola	mitochondrion, plastid	79.09	79.35
Bra035190.1-P	Field mustard	mitochondrion, plastid	78.93	79.32
PGSC0003DMT400073724	Potato	mitochondrion, plastid	81.04	79.24
CDX87299	Canola	mitochondrion, plastid	78.77	79.15
Solyc12g042950.1.1	Tomato	mitochondrion, plastid	80.39	78.86
CDY57697	Canola	plastid	78.61	78.73
AT1G80300.1	Thale cress	plastid	79.58	78.69
CDX79394	Canola	plastid	78.44	78.57
Bra003560.1-P	Field mustard	plastid	78.28	78.41
Bra026126.1-P	Field mustard	plastid	76.82	77.83
CDY36568	Canola	mitochondrion	76.82	77.7
CDY39658	Canola	mitochondrion	77.15	77.52
AT1G15500.1	Thale cress	mitochondrion	77.47	77.35
CDX83974	Canola	plastid	76.34	77.34
Bra016656.1-P	Field mustard	plastid	76.34	77.21
CDX96838	Canola	plastid	76.34	76.96
HORVU7Hr1G057290.1	Barley	endoplasmic reticulum, golgi	5.83	76.6
TraesCS3A01G233300.1	Wheat	plastid	66.77	66.24
GSMUA_Achr7P08430_001	Banana	plastid	60.62	66.08
TraesCS3B01G262600.1	Wheat	plastid	66.61	66.08
EES03353	Sorghum	plastid	67.75	65.72
Os02t0208100-01	Rice	plastid	67.1	65.71
TraesCS6A01G178000.1	Wheat	golgi	65.32	65.42
TraesCS6D01G166400.1	Wheat	mitochondrion, plastid	65.48	65.27
Os01t0647100-01	Rice	plastid	67.91	65.26
TraesCS6B01G206800.1	Wheat	golgi	65.48	65.16
KXG29763	Sorghum	plastid	67.1	64.19
GSMUA_Achr10P...	Banana	mitochondrion	61.75	62.77
GSMUA_Achr2P16990_001	Banana	plastid	61.1	62.21
TraesCS3D01G219900.1	Wheat	golgi, unclear	66.77	61.49
Zm00001d039684_P001	Maize	cytosol	8.1	45.45

Protein Annotations

EntrezGene:100775892	MapMan:24.2.2.14	EMBL:ACUP02009109	InterPro:ADP_ATP_car	EnsemblPlantsGene:GLYMA_15G011500	GO:GO:0000166
GO:GO:0003674	GO:GO:0005215	GO:GO:0005471	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006862	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0015866	GO:GO:0015867	GO:GO:0016020	GO:GO:0016021
GO:GO:0031969	UniProt:I1MCJ2	EnsemblPlants:KRH09791	ProteinID:KRH09791	ProteinID:KRH09791.1	InterPro:MFS_trans_sf
PFAM:PF03219	PANTHER:PTHR31187	PANTHER:PTHR31187:SF3	SUPFAM:SSF103473	TIGRFAMs:TIGR00769	TMHMM:TMhelix
UniParc:UPI000233B5C9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:892118..895716

Molecular Weight (calculated)

67585.7 Da

IEP (calculated)

10.050

GRAVY (calculated)

0.402

Length

617 amino acids

Sequence
(BLAST)

001: MDAVLQTRGL LSLPTNPINR ISLLHPSHGL RHRLFSPKPK NLSGSSLSSN GFPKLSPKAN VFAQRDKNKN FFLCRAEAAA AAAASFGEPG SEKPKLLGIE
101: VATLKKIVPL GLMFFCILFN YTILRDTKDV LVVTARGSSA EIIPFLKTWV NLPMAIGFML LYTKLANVLS KQALFYSIIL PFIAFFGAFG FVLYPLSNYI
201: HPEAFADKLL NILGPRFLGP LAIMRIWSFC LFYVMAELWG SVVISVLFWG FANQITTVDE AKRFYPLFGL GANVALVFSG RTVKYFSNLR STLGPGVDGW
301: AISLKAMMSI VVGMGVAICF LYWWVNNYVP LPTRSKKKKE KPKMGTMESI KFLVSSKYIR DLATLVVAYG ISINLVEVTW KSKLKAQFPS PNEYSSFMGD
401: FSTATGIATF IMMLLSQFIF DKYGWGVGAK ITPTVLLLTG VGFFSLILFG GPIAPVIAKF GMTPLLAAVY VGAMQNIFSK SAKYSLFDPC KEMAYIPLDE
501: DTKVKGKAAI DVVCNPLGKS GGALIQQFMI LTFGSLANST PYLGGVLLVI VLVWLSAAKS LDTQFTALRR EEELEKEMER AAAVKIPVVA KDEDENGSLK
601: SVPLLNPTAG DSSSILN

Best Arabidopsis Sequence Match ( AT1G80300.1 )
(BLAST)

001: MEAVIQTRGL LSLPTKPIGV RSQLQPSHGL KQRLFAAKPR NLHGLSLSFN GHKKFQTFEP TLHGISISHK ERSTEFICKA EAAAAGDGAV FGEGDSAAVV
101: ASPKIFGVEV ATLKKIIPLG LMFFCILFNY TILRDTKDVL VVTAKGSSAE IIPFLKTWVN LPMAIGFMLL YTKLSNVLSK KALFYTVIVP FIIYFGAFGF
201: VMYPLSNYIH PEALADKLLT TLGPRFMGPI AILRIWSFCL FYVMAELWGS VVVSVLFWGF ANQITTVDEA KKFYPLFGLG ANVALIFSGR TVKYFSNLRK
301: NLGPGVDGWA VSLKAMMSIV VGMGLAICLL YWWVNRYVPL PTRSKNKKEK PKMGTMESLK FLVSSPYIRD LATLVVAYGI SINLVEVTWK SKLKAQFPSP
401: NEYSAFMGDF STCTGVATFT MMLLSQYVFN KYGWGVAAKI TPTVLLLTGV AFFSLILFGG PFAPLVAKLG MTPLLAAVYV GALQNIFSKS AKYSLFDPCK
501: EMAYIPLDED TKVKGKAAID VVCNPLGKSG GALIQQFMIL SFGSLANSTP YLGMILLVIV TAWLAAAKSL EGQFNSLRSE EELEKEMERA SSVKIPVVSQ
601: DESGNGSLGE SPSSSPEKSA PTNL

Arabidopsis Description

AATP1ADP,ATP carrier protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39002]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.