CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 7
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80300.1	KRH22291	AT2G42580.1	19000166
AT1G80300.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44405	Soybean	endoplasmic reticulum	95.35	95.19
KRH09791	Soybean	extracellular	84.91	85.74
KRH23529	Soybean	endoplasmic reticulum	84.59	85.69
VIT_09s0002g05710.t01	Wine grape	plastid	82.66	82.93
Solyc03g119970.2.1	Tomato	plastid	81.22	80.96
PGSC0003DMT400014304	Potato	plastid	81.22	80.83
Bra035190.1-P	Field mustard	mitochondrion, plastid	79.13	80.29
CDY57697	Canola	plastid	79.29	80.19
Bra003560.1-P	Field mustard	plastid	78.97	79.87
CDX79394	Canola	plastid	78.97	79.87
CDX87299	Canola	mitochondrion, plastid	78.65	79.8
PGSC0003DMT400073724	Potato	mitochondrion, plastid	80.74	79.71
Solyc12g042950.1.1	Tomato	mitochondrion, plastid	80.42	79.65
CDY39988	Canola	mitochondrion, plastid	78.33	79.35
AT1G80300.1	Thale cress	plastid	79.45	79.33
HORVU7Hr1G057290.1	Barley	endoplasmic reticulum, golgi	5.94	78.72
Bra026126.1-P	Field mustard	plastid	76.08	77.83
AT1G15500.1	Thale cress	mitochondrion	77.21	77.83
CDY36568	Canola	mitochondrion	76.08	77.7
CDY39658	Canola	mitochondrion	76.4	77.52
Bra016656.1-P	Field mustard	plastid	75.76	77.38
CDX83974	Canola	plastid	75.6	77.34
CDX96838	Canola	plastid	75.92	77.29
GSMUA_Achr7P08430_001	Banana	plastid	62.12	68.37
Os02t0208100-01	Rice	plastid	68.54	67.78
TraesCS6A01G178000.1	Wheat	golgi	66.77	67.53
TraesCS6B01G206800.1	Wheat	golgi	66.93	67.26
TraesCS6D01G166400.1	Wheat	mitochondrion, plastid	66.77	67.21
Os01t0647100-01	Rice	plastid	68.54	66.51
TraesCS3B01G262600.1	Wheat	plastid	66.29	66.4
EES03353	Sorghum	plastid	67.74	66.35
TraesCS3A01G233300.1	Wheat	plastid	65.97	66.08
GSMUA_Achr10P...	Banana	mitochondrion	64.37	66.06
KXG29763	Sorghum	plastid	67.74	65.43
GSMUA_Achr2P16990_001	Banana	plastid	62.76	64.52
TraesCS3D01G219900.1	Wheat	golgi, unclear	66.29	61.64
Zm00001d039684_P001	Maize	cytosol	7.87	44.55

Protein Annotations

EntrezGene:100793284	MapMan:24.2.2.14	EMBL:ACUP02004153	InterPro:ADP_ATP_car	EnsemblPlantsGene:GLYMA_07G033100	GO:GO:0000166
GO:GO:0003674	GO:GO:0005215	GO:GO:0005471	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006862	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0015866	GO:GO:0015867	GO:GO:0016020	GO:GO:0016021
GO:GO:0031969	UniProt:I1KH50	EnsemblPlants:KRH47502	ProteinID:KRH47502	ProteinID:KRH47502.1	PFAM:PF03219
PANTHER:PTHR31187	PANTHER:PTHR31187:SF3	TIGRFAMs:TIGR00769	TMHMM:TMhelix	UniParc:UPI00023C81D0	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:2597537..2602263

Molecular Weight (calculated)

67762.5 Da

IEP (calculated)

9.832

GRAVY (calculated)

0.364

Length

623 amino acids

Sequence
(BLAST)

001: MDAVVQTRGL LSLPTNPKTR VSHHLHPSHG LKHRFLSLKP KPLSAPSLSA AAAKFHPFGP KPQNLFICRA EAAAAADGPA QPAFGEAEVA EKPKLLGIEI
101: TTLKKIIPLG LMFFCILFNY TILRDTKDVL VITARGSSAE IIPFLKTWVN LPMAVGFMLL YTKLSNVLSK QALFYTVILP FIAFFGAFGF VLYPLSNYIH
201: PEAFADKLLN ILGPRFLGPL AIMRIWSFCL FYVMAELWGS VVISVLFWGF ANQITTIEEA KRFYPLFGLG ANVALIFSGR TVKYFSNLRQ NLGPGVDGWA
301: ISLKAMMSIV VGMGFAICFL YWWVNNYVPL PTRSKKKKEK PKMGTMESLK FLVSSKYIRD LATLVVAYGI SINLVEVTWK SKLKAQFPSP NEYSSFMGDF
401: STATGIATFT MMLVSQFIFD KYGWGVAATI TPTVLLLTGV GFFSLILFGG PLAPGLASIG MTPLLAAVYV GALQNIFSKS AKYSLFDPCK EMAYIPLDED
501: TKVKGKAAID VVCNPLGKSG GALIQQFMIL TFGSLANSTP YLGGVLLLIV SAWLAAAKSL DTQFTALRKE EELEKEMERA AAVKIPVVAE TESGNGSLAT
601: GSPLNPSSGD SSSSPSEAST PRN

Best Arabidopsis Sequence Match ( AT1G80300.1 )
(BLAST)

001: MEAVIQTRGL LSLPTKPIGV RSQLQPSHGL KQRLFAAKPR NLHGLSLSFN GHKKFQTFEP TLHGISISHK ERSTEFICKA EAAAAGDGAV FGEGDSAAVV
101: ASPKIFGVEV ATLKKIIPLG LMFFCILFNY TILRDTKDVL VVTAKGSSAE IIPFLKTWVN LPMAIGFMLL YTKLSNVLSK KALFYTVIVP FIIYFGAFGF
201: VMYPLSNYIH PEALADKLLT TLGPRFMGPI AILRIWSFCL FYVMAELWGS VVVSVLFWGF ANQITTVDEA KKFYPLFGLG ANVALIFSGR TVKYFSNLRK
301: NLGPGVDGWA VSLKAMMSIV VGMGLAICLL YWWVNRYVPL PTRSKNKKEK PKMGTMESLK FLVSSPYIRD LATLVVAYGI SINLVEVTWK SKLKAQFPSP
401: NEYSAFMGDF STCTGVATFT MMLLSQYVFN KYGWGVAAKI TPTVLLLTGV AFFSLILFGG PFAPLVAKLG MTPLLAAVYV GALQNIFSKS AKYSLFDPCK
501: EMAYIPLDED TKVKGKAAID VVCNPLGKSG GALIQQFMIL SFGSLANSTP YLGMILLVIV TAWLAAAKSL EGQFNSLRSE EELEKEMERA SSVKIPVVSQ
601: DESGNGSLGE SPSSSPEKSA PTNL

Arabidopsis Description

AATP1ADP,ATP carrier protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39002]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.