Factsheet for TraesCS3D01G219900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 1
mitochondrion 6
plasma membrane 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80300.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT1G80300.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G233300.1	Wheat	plastid	84.93	91.48
TraesCS3B01G262600.1	Wheat	plastid	84.78	91.32
HORVU3Hr1G058170.1	Barley	plastid	83.73	88.77
Os01t0647100-01	Rice	plastid	74.78	78.04
Zm00001d011471_P001	Maize	plastid	73.43	77.6
EES03353	Sorghum	plastid	73.28	77.2
Zm00001d044060_P001	Maize	extracellular, plasma membrane	72.39	74.62
TraesCS6D01G166400.1	Wheat	mitochondrion, plastid	66.42	71.89
GSMUA_Achr7P08430_001	Banana	plastid	59.1	69.96
Bra026126.1-P	Field mustard	plastid	61.79	67.98
CDY36568	Canola	mitochondrion	61.79	67.87
Bra016656.1-P	Field mustard	plastid	61.79	67.87
CDX96838	Canola	plastid	61.94	67.81
Bra035190.1-P	Field mustard	mitochondrion, plastid	61.94	67.59
CDY39658	Canola	mitochondrion	61.94	67.59
CDX83974	Canola	plastid	61.34	67.49
CDX87299	Canola	mitochondrion, plastid	61.79	67.43
CDY39988	Canola	mitochondrion, plastid	61.79	67.32
AT1G15500.1	Thale cress	mitochondrion	61.94	67.15
CDY57697	Canola	plastid	61.64	67.05
Bra003560.1-P	Field mustard	plastid	61.64	67.05
CDX79394	Canola	plastid	61.64	67.05
PGSC0003DMT400014304	Potato	plastid	62.54	66.93
VIT_09s0002g05710.t01	Wine grape	plastid	61.94	66.83
KRH44405	Soybean	endoplasmic reticulum	62.24	66.83
KRH09791	Soybean	extracellular	61.49	66.77
Solyc03g119970.2.1	Tomato	plastid	62.24	66.72
GSMUA_Achr2P16990_001	Banana	plastid	60.3	66.67
KRH23529	Soybean	endoplasmic reticulum	61.04	66.5
PGSC0003DMT400073724	Potato	mitochondrion, plastid	62.54	66.4
AT1G80300.1	Thale cress	plastid	61.79	66.35
KRH47502	Soybean	mitochondrion	61.64	66.29
GSMUA_Achr10P...	Banana	mitochondrion	60.0	66.23
Solyc12g042950.1.1	Tomato	mitochondrion, plastid	62.09	66.14
Solyc08g066920.1.1	Tomato	cytosol	11.19	38.07

Protein Annotations

EnsemblPlants:TraesCS3D01G219900.1	EnsemblPlantsGene:TraesCS3D01G219900	GO:GO:0003674	GO:GO:0005215	GO:GO:0005471	GO:GO:0005575
GO:GO:0006810	GO:GO:0006862	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:ADP_ATP_car
PANTHER:PTHR31187	PANTHER:PTHR31187:SF3	PFAM:PF03219	SEG:seg	TIGRFAMs:TIGR00769	TMHMM:TMhelix
MapMan:24.2.2.14	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:299906753..299910922

Molecular Weight (calculated)

72254.2 Da

IEP (calculated)

10.226

GRAVY (calculated)

0.324

Length

670 amino acids

Sequence
(BLAST)

001: MRHLLIHAQA RHPLPSLGPS PPSPSPQSAP WCGRGSGGDE TSRAERRHPS MESLALLSAK PGLSLRAGPR LPLPRLRATR ASLSTASSSR PAALQAPLLS
101: SRAPSSQDAV LGYGLLKRRI SAGVSCSAAA AAAAAVPPAQ PEVKKFLGVG LPTLKKIVPL GLMFFCILFN YTILRDTKDV LVVTAKGSSA EIIPFLKTWV
201: NLPMAIGFML AYSKLSDVLS REALFYTVIF PFIAFFGLFG FVLYPLRDAI HPTALADKLL AALGPSFLGP VAILRIWSFC LFYVMAELWG SVVVSVLFWG
301: FANQITTVDE AKEFYPLFGL GANIALIFSG RTVKYFSNLR KTMGPGVDGW EVSLKGMMGI VVLLGLVITS IYWGVNKLVL NDPSLPKSDH KKKKNKPKLS
401: MKESMKVLIS SKYVRDLATL VVAYGISINL VEVTWKSKLK AQFPSPNEYS SFMGDFSTAT GIATFTMMLL GRIIFQRFGW GVAAMITPTV LLVTGVGFFS
501: LILFGQPLTP LLATWGMTPL LAAVYVGALQ NIFSKSAKYS LFDPCKEMAY IPLDGDMKLK GKAAIDVVCN PLGKSGGALI QQFLILIFGS LANSTPYLGG
601: ILLVIVLAWL GAARSLDKQF SSLAKEDLRK EMSKEKVETA APKEPESATD VLVEQSNGTE NSPSDSSPAQ

Best Arabidopsis Sequence Match ( AT1G15500.1 )
(BLAST)

001: MEGLIQTRGI LSLPAKPIGV RRLLQPSHGL KQRLFTTNLP ALSLSSNGHK KFQAFQQIPL GISVSHKERS RGFICKAEAA AAGGGNVFDE GDTAAMAVSP
101: KIFGVEVTTL KKIVPLGLMF FCILFNYTIL RDTKDVLVVT AKGSSAEIIP FLKTWVNLPM AIGFMLLYTK LSNVLSKKAL FYTVIVPFIV YFGAFGFVMY
201: PLSNLIHPEA LADKLLATLG PRFMGPLAIM RIWSFCLFYV MAELWGSVVV SVLFWGFANQ ITTVDEAKKF YPLFGLGANV ALIFSGRTVK YFSNMRKNLG
301: PGVDGWAVSL KAMMSIVVGM GLAICFLYWW VNRYVPLPTR SKKKKVKPQM GTMESLKFLV SSPYIRDLAT LVVAYGISIN LVEVTWKSKL KAQFPSPNEY
401: SAFMGDFSTC TGIATFTMML LSQYVFKKYG WGVAAKITPT VLLLTGVAFF SLILFGGPFA PLVAKLGMTP LLAAVYVGAL QNIFSKSAKY SLFDPCKEMA
501: YIPLDEDTKV KGKAAIDVVC NPLGKSGGAL IQQFMILTFG SLANSTPYLG VILLGIVTAW LAAAKSLEGQ FNTLMSEEEL EREMERASSV KIPVVSQEDA
601: PSGETTSQLS EKSTPTGI

Arabidopsis Description

AATP2ADP,ATP carrier protein [Source:UniProtKB/TrEMBL;Acc:A0A178WDN7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.