CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 6
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80300.1	KRH22291	AT2G42580.1	19000166
AT1G80300.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47502	Soybean	mitochondrion	95.19	95.35
KRH23529	Soybean	endoplasmic reticulum	84.62	85.85
KRH09791	Soybean	extracellular	84.78	85.74
VIT_09s0002g05710.t01	Wine grape	plastid	82.85	83.25
Solyc03g119970.2.1	Tomato	plastid	81.57	81.44
PGSC0003DMT400014304	Potato	plastid	81.41	81.15
CDY57697	Canola	plastid	79.65	80.68
CDX79394	Canola	plastid	79.49	80.52
Bra003560.1-P	Field mustard	plastid	79.33	80.36
CDX87299	Canola	mitochondrion, plastid	79.01	80.29
PGSC0003DMT400073724	Potato	mitochondrion, plastid	81.09	80.19
Solyc12g042950.1.1	Tomato	mitochondrion, plastid	80.77	80.13
Bra035190.1-P	Field mustard	mitochondrion, plastid	78.69	79.97
CDY39988	Canola	mitochondrion, plastid	78.53	79.67
AT1G80300.1	Thale cress	plastid	79.65	79.65
HORVU7Hr1G057290.1	Barley	endoplasmic reticulum, golgi	5.93	78.72
CDY39658	Canola	mitochondrion	77.24	78.5
Bra026126.1-P	Field mustard	plastid	76.6	78.49
AT1G15500.1	Thale cress	mitochondrion	77.72	78.48
CDY36568	Canola	mitochondrion	76.6	78.36
Bra016656.1-P	Field mustard	plastid	76.28	78.03
CDX83974	Canola	plastid	75.96	77.83
CDX96838	Canola	plastid	76.28	77.78
Os02t0208100-01	Rice	plastid	69.07	68.41
TraesCS6A01G178000.1	Wheat	golgi	67.31	68.18
TraesCS6B01G206800.1	Wheat	golgi	67.47	67.9
TraesCS6D01G166400.1	Wheat	mitochondrion, plastid	67.31	67.85
GSMUA_Achr7P08430_001	Banana	plastid	61.38	67.67
TraesCS3B01G262600.1	Wheat	plastid	66.83	67.04
TraesCS3A01G233300.1	Wheat	plastid	66.19	66.4
GSMUA_Achr10P...	Banana	mitochondrion	64.26	66.06
KXG29763	Sorghum	plastid	68.27	66.05
EES03353	Sorghum	plastid	67.31	66.04
Os01t0647100-01	Rice	plastid	67.79	65.89
GSMUA_Achr2P16990_001	Banana	plastid	63.46	65.35
TraesCS3D01G219900.1	Wheat	golgi, unclear	66.83	62.24
Zm00001d039684_P001	Maize	cytosol	7.85	44.55

Protein Annotations

EntrezGene:100777154	MapMan:24.2.2.14	EMBL:ACUP02004928	InterPro:ADP_ATP_car	EnsemblPlantsGene:GLYMA_08G209100	GO:GO:0000166
GO:GO:0003674	GO:GO:0005215	GO:GO:0005471	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006862	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0015866	GO:GO:0015867	GO:GO:0016020	GO:GO:0016021
GO:GO:0031969	UniProt:I1KVA8	EnsemblPlants:KRH44405	ProteinID:KRH44405	ProteinID:KRH44405.1	PFAM:PF03219
PANTHER:PTHR31187	PANTHER:PTHR31187:SF3	TIGRFAMs:TIGR00769	TMHMM:TMhelix	UniParc:UPI0001CA9B98	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:16924964..16929035

Molecular Weight (calculated)

67856.7 Da

IEP (calculated)

9.771

GRAVY (calculated)

0.372

Length

624 amino acids

Sequence
(BLAST)

001: MDAIVQTRGL LSLPTNPKTR VSHHLHLSHG LKHRFLSLKP KPLSTPSLSA AAAVKFHPFG PKPQNLFICR AEAAAAADGP AQPAFGEPEV AEKPKLLGIE
101: ITTLKKIIPL GLMFFCILFN YTILRDTKDV LVVTAKGSSA EIIPFLKTWV NLPMAVGFML LYTKLANVLS KQALFYSVIL PFIAFFGAFG FVLYPLSNYI
201: HPEAFADKLL NILGPRFLGP LAIMRIWSFC LFYVMAELWG SVVISVLFWG FANQITTIEE AKRFYPLFGL GANVALIFSG RTVKYFSNLR QNLGPGVDGW
301: AISLKAMMSI VVGMGFAICF LYWWVNNYVP LPTRSKKKKE KPKMGTMESL KFLVSSKYIR DLATLVVAYG ISINLVEVTW KSKLKAQFPS PNEYSSFMGD
401: FSTATGIATF TMMLVSQFIF DKYGWGVAAT ITPTVLLLTG VGFFSLILFG GPLAPGLASL GMTPLLAAVY VGALQNIFSK SAKYSLFDPC KEMAYIPLDE
501: DTKVKGKAAI DVVCNPLGKS GGALIQQFMI LTFGSLANST PYLGGILLLI VSAWLAAAKS LDTQFTALRK EEELEKEMER AATVKIPVVA ESEGGNGSLT
601: AGSPLNPSSG DSSSSPSEAS TPHN

Best Arabidopsis Sequence Match ( AT1G80300.1 )
(BLAST)

001: MEAVIQTRGL LSLPTKPIGV RSQLQPSHGL KQRLFAAKPR NLHGLSLSFN GHKKFQTFEP TLHGISISHK ERSTEFICKA EAAAAGDGAV FGEGDSAAVV
101: ASPKIFGVEV ATLKKIIPLG LMFFCILFNY TILRDTKDVL VVTAKGSSAE IIPFLKTWVN LPMAIGFMLL YTKLSNVLSK KALFYTVIVP FIIYFGAFGF
201: VMYPLSNYIH PEALADKLLT TLGPRFMGPI AILRIWSFCL FYVMAELWGS VVVSVLFWGF ANQITTVDEA KKFYPLFGLG ANVALIFSGR TVKYFSNLRK
301: NLGPGVDGWA VSLKAMMSIV VGMGLAICLL YWWVNRYVPL PTRSKNKKEK PKMGTMESLK FLVSSPYIRD LATLVVAYGI SINLVEVTWK SKLKAQFPSP
401: NEYSAFMGDF STCTGVATFT MMLLSQYVFN KYGWGVAAKI TPTVLLLTGV AFFSLILFGG PFAPLVAKLG MTPLLAAVYV GALQNIFSKS AKYSLFDPCK
501: EMAYIPLDED TKVKGKAAID VVCNPLGKSG GALIQQFMIL SFGSLANSTP YLGMILLVIV TAWLAAAKSL EGQFNSLRSE EELEKEMERA SSVKIPVVSQ
601: DESGNGSLGE SPSSSPEKSA PTNL

Arabidopsis Description

AATP1ADP,ATP carrier protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39002]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.