CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 8
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80300.1	KRH22291	AT2G42580.1	19000166
AT1G80300.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09791	Soybean	extracellular	96.42	96.11
KRH44405	Soybean	endoplasmic reticulum	85.85	84.62
KRH47502	Soybean	mitochondrion	85.69	84.59
VIT_09s0002g05710.t01	Wine grape	plastid	83.41	82.61
Solyc03g119970.2.1	Tomato	plastid	81.95	80.64
PGSC0003DMT400014304	Potato	plastid	81.63	80.19
PGSC0003DMT400073724	Potato	mitochondrion, plastid	81.14	79.08
CDY39988	Canola	mitochondrion, plastid	78.86	78.86
Bra035190.1-P	Field mustard	mitochondrion, plastid	78.7	78.83
Solyc12g042950.1.1	Tomato	mitochondrion, plastid	80.49	78.7
CDX87299	Canola	mitochondrion, plastid	78.54	78.66
CDY57697	Canola	plastid	78.21	78.08
CDX79394	Canola	plastid	78.05	77.92
Bra003560.1-P	Field mustard	plastid	77.89	77.76
AT1G80300.1	Thale cress	plastid	78.86	77.72
Bra026126.1-P	Field mustard	plastid	76.42	77.18
CDY36568	Canola	mitochondrion	76.42	77.05
HORVU7Hr1G057290.1	Barley	endoplasmic reticulum, golgi	5.85	76.6
AT1G15500.1	Thale cress	mitochondrion	76.91	76.54
CDY39658	Canola	mitochondrion	76.26	76.38
CDX83974	Canola	plastid	75.61	76.35
Bra016656.1-P	Field mustard	plastid	75.28	75.9
CDX96838	Canola	plastid	75.28	75.65
GSMUA_Achr7P08430_001	Banana	plastid	60.98	66.25
TraesCS3A01G233300.1	Wheat	plastid	66.83	66.08
TraesCS3B01G262600.1	Wheat	plastid	66.67	65.92
TraesCS6A01G178000.1	Wheat	golgi	65.69	65.58
Os02t0208100-01	Rice	plastid	67.15	65.56
TraesCS6D01G166400.1	Wheat	mitochondrion, plastid	65.85	65.43
EES03353	Sorghum	plastid	67.64	65.41
TraesCS6B01G206800.1	Wheat	golgi	65.85	65.32
Os01t0647100-01	Rice	plastid	67.32	64.49
KXG29763	Sorghum	plastid	66.99	63.88
GSMUA_Achr10P...	Banana	mitochondrion	61.95	62.77
GSMUA_Achr2P16990_001	Banana	plastid	61.14	62.05
TraesCS3D01G219900.1	Wheat	golgi, unclear	66.5	61.04
Zm00001d039684_P001	Maize	cytosol	7.97	44.55

Protein Annotations

EntrezGene:100778352	MapMan:24.2.2.14	EMBL:ACUP02008471	InterPro:ADP_ATP_car	EnsemblPlantsGene:GLYMA_13G362300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005215	GO:GO:0005471	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006862	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0015866	GO:GO:0015867	GO:GO:0016020	GO:GO:0016021
GO:GO:0031969	UniProt:I1M5Q4	EnsemblPlants:KRH23529	ProteinID:KRH23529	ProteinID:KRH23529.1	InterPro:MFS_trans_sf
PFAM:PF03219	PANTHER:PTHR31187	PANTHER:PTHR31187:SF3	SUPFAM:SSF103473	TIGRFAMs:TIGR00769	TMHMM:TMhelix
UniParc:UPI000233B6AA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:44892928..44896710

Molecular Weight (calculated)

67589.5 Da

IEP (calculated)

10.014

GRAVY (calculated)

0.366

Length

615 amino acids

Sequence
(BLAST)

001: MDAVLQTRGL LSLPANPVNR ISLFNPSQGL KHRFFSPKPK NLSGSSLSSN GFPKLSPRPN NVFAQRDQNK NLFLCRAEAA AASFGEPESE KQKFLGIEVA
101: TLKKIVPLGM MFFCILFNYT ILRDTKDVLV VTARGSSAEI IPFLKTWVNL PMAIGFMLLY TKLANVLSKQ ALFYSIILPF IAFFGAFGFV LYPLSNYIHP
201: EAFADKLLNI LGPRFLGPLA IMRIWSFCLF YVMAELWGSV VISVLFWGFA NQITTIDEAK RFYPLFGLGA NVALVFSGRT VKYFSNLRST LGPGVDGWAI
301: SLKAMMSIVV GMGFAICFLY WWVNNYVPLP TRSKKKKEKP KMGTMESIKF LVSSKYIRDL ATLVVAYGIS INLVEVTWKS KLKAQFPSPN EYSSFMGDFS
401: TATGIATFIM MLLSQFIFDK YGWGVAAKIT PTVLLLTGVG FFSLILFGGP IAPVIAKFGM TPLLAAVYVG AMQNIFSKSA KYSLFDPCKE MAYIPLDEDT
501: KVKGKAAIDV VCNPLGKSGG ALIQQFMILT FGSLANSTPY LGGVLLVIVL AWLSAAKSLD TQFTALRREE ELEKEMERAA AVKIPVVAKD EDGNGSLKSV
601: PLLNPTAGDS SSTLN

Best Arabidopsis Sequence Match ( AT1G80300.1 )
(BLAST)

001: MEAVIQTRGL LSLPTKPIGV RSQLQPSHGL KQRLFAAKPR NLHGLSLSFN GHKKFQTFEP TLHGISISHK ERSTEFICKA EAAAAGDGAV FGEGDSAAVV
101: ASPKIFGVEV ATLKKIIPLG LMFFCILFNY TILRDTKDVL VVTAKGSSAE IIPFLKTWVN LPMAIGFMLL YTKLSNVLSK KALFYTVIVP FIIYFGAFGF
201: VMYPLSNYIH PEALADKLLT TLGPRFMGPI AILRIWSFCL FYVMAELWGS VVVSVLFWGF ANQITTVDEA KKFYPLFGLG ANVALIFSGR TVKYFSNLRK
301: NLGPGVDGWA VSLKAMMSIV VGMGLAICLL YWWVNRYVPL PTRSKNKKEK PKMGTMESLK FLVSSPYIRD LATLVVAYGI SINLVEVTWK SKLKAQFPSP
401: NEYSAFMGDF STCTGVATFT MMLLSQYVFN KYGWGVAAKI TPTVLLLTGV AFFSLILFGG PFAPLVAKLG MTPLLAAVYV GALQNIFSKS AKYSLFDPCK
501: EMAYIPLDED TKVKGKAAID VVCNPLGKSG GALIQQFMIL SFGSLANSTP YLGMILLVIV TAWLAAAKSL EGQFNSLRSE EELEKEMERA SSVKIPVVSQ
601: DESGNGSLGE SPSSSPEKSA PTNL

Arabidopsis Description

AATP1ADP,ATP carrier protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39002]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.