Factsheet for TraesCS4D01G109000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42440.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G42440.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G42440.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G42440.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G42440.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G42440.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G42440.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G42440.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G42440.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G111300.1	Wheat	plasma membrane	98.13	98.13
TraesCS4A01G207800.1	Wheat	plasma membrane	97.33	97.33
HORVU4Hr1G020000.1	Barley	plasma membrane	93.87	94.37
Os11t0168600-01	Rice	cytosol, plasma membrane	15.47	58.59
Zm00001d053133_P001	Maize	cytosol, peroxisome, plasma membrane	63.47	57.07
KXG27836	Sorghum	plastid	66.67	56.56
GSMUA_Achr10P...	Banana	plasma membrane	45.6	48.17
CDY14753	Canola	plasma membrane	44.53	45.88
CDY68216	Canola	plasma membrane	44.0	45.33
Bra016962.1-P	Field mustard	plasma membrane	43.73	45.05
VIT_18s0072g00170.t01	Wine grape	plasma membrane	43.2	44.51
AT5G42440.1	Thale cress	golgi, plasma membrane	42.4	44.29
KRH35107	Soybean	plasma membrane	42.4	43.21
KRG91688	Soybean	plasma membrane	42.67	43.13
Solyc04g071870.1.1	Tomato	plasma membrane	40.8	40.16
PGSC0003DMT400064560	Potato	plasma membrane	40.27	39.63
KRG94081	Soybean	plasma membrane	24.0	37.34
KRG94367	Soybean	plasma membrane	22.67	29.11

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.10.2	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27000	PANTHER:PTHR27000:SF48	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4D01G109000	EnsemblPlants:TraesCS4D01G109000.1	SEG:seg	:

Description

No Description!

Coordinates

chr4D:-:88141018..88142961

Molecular Weight (calculated)

40449.3 Da

IEP (calculated)

7.103

GRAVY (calculated)

-0.122

Length

375 amino acids

Sequence
(BLAST)

001: MDGVYEALVV TVAAFVGISV PCLLVAFLCR HRKNRLLEPD HRCSSSSSLP ISAPVGISSE LSSSWSLYGS AVDSSLKKLS LDDLARATGE FSPDNIIGDG
101: SFGFVYRAVL PDGGPAVAVK RLSADHAAGA GNREFRAELE VLGSLSHRNL ARLLGYCAAG RDRLLVYELL ERGSLDAWLH GDAASAGGSL PWPARLRVTR
201: GAAAALAFLH HDRHPPVLHR DVKSSNVLLD EGFEAKLADF GHARVVTGGP AASQLSTQAA GTAGYMAPEI REGVGASVKA DVYSFGVLMM ETVTGRRPSW
301: PMKNIRGKEV ELLKWAREKV EADISSEIAD HRMGLEGEKE TKEVKTFLDI AQSCTEESPK YRPTMKEVVE RLNRL

Best Arabidopsis Sequence Match ( AT5G42440.1 )
(BLAST)

001: MDYQISLILA TSISSIFLLL IVFTVVMIVC RRRPPIQNHP RRNRNFPDPD PDLNTETVTE SFDPSICEIS MAELTIATKN FSSDLIVGDG SFGLVYRAQL
101: SNGVVVAVKK LDHDALQGFR EFAAEMDTLG RLNHPNIVRI LGYCISGSDR ILIYEFLEKS SLDYWLHETD EENSPLTWST RVNITRDVAK GLAYLHGLPK
201: PIIHRDIKSS NVLLDSDFVA HIADFGLARR IDASRSHVST QVAGTMGYMP PEYWEGNTAA TVKADVYSFG VLMLELATRR RPNLTVVVDE KEVGLAQWAV
301: IMVEQNRCYE MLDFGGVCGS EKGVEEYFRI ACLCIKESTR ERPTMVQVVE LLEELCRFM

Arabidopsis Description

At5g42440 [Source:UniProtKB/TrEMBL;Acc:Q9FIH3]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.