CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42440.1	EES01073	AT2G42580.1	19000166
AT5G42440.1	EES02247	AT2G42580.1	19000166
AT5G42440.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053133_P001	Maize	cytosol, peroxisome, plasma membrane	70.59	74.82
HORVU4Hr1G020000.1	Barley	plasma membrane	56.79	67.29
TraesCS4D01G109000.1	Wheat	plasma membrane	56.56	66.67
TraesCS4B01G111300.1	Wheat	plasma membrane	56.33	66.4
TraesCS4A01G207800.1	Wheat	plasma membrane	56.33	66.4
Os11t0168600-01	Rice	cytosol, plasma membrane	12.44	55.56
GSMUA_Achr10P...	Banana	plasma membrane	37.56	46.76
CDY14753	Canola	plasma membrane	37.1	45.05
CDY68216	Canola	plasma membrane	36.43	44.23
Bra016962.1-P	Field mustard	plasma membrane	36.2	43.96
AT5G42440.1	Thale cress	golgi, plasma membrane	35.52	43.73
VIT_18s0072g00170.t01	Wine grape	plasma membrane	33.71	40.93
KRH35107	Soybean	plasma membrane	33.48	40.22
Solyc04g071870.1.1	Tomato	plasma membrane	33.94	39.37
KRG91688	Soybean	plasma membrane	33.03	39.35
PGSC0003DMT400064560	Potato	plasma membrane	33.71	39.11
KRG94081	Soybean	plasma membrane	19.68	36.1
KRG94367	Soybean	plasma membrane	18.78	28.42

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.10.2	Gene3D:3.30.200.20	UniProt:A0A1B6PQ96	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
EnsemblPlants:KXG27836	ProteinID:KXG27836	ProteinID:KXG27836.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF176	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	EnsemblPlantsGene:SORBI_3005G052000	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI00081AE63A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:5114336..5116118

Molecular Weight (calculated)

46222.1 Da

IEP (calculated)

8.294

GRAVY (calculated)

-0.037

Length

442 amino acids

Sequence
(BLAST)

001: MATPTSPRAS KSTAARGRPP QLTPSTTWFS TTPSPSSTST QSSVHKISTH AAAGHATMDT PLVALIVVAG TSLAVAVPCL LLAFLCRRRD SSKSQLKPRC
101: CSAAGAAAAS RLPVSATAGT TTADCASWSF YGTPADATLL KLSLADLAAA TGGFSPDNII GDGGYGFVYR AVLPNGVAVA VKRLSGDGDA AAGNREFRAE
201: LEVLGSLSHP NLARLLGYCA AGRDRILVYE LLERGSLDAW LHGTDAEDGG GTDSLPWSAR LRVARGAAAA LEFLHHGRHP PVLHRDVKSS NVLLGEGFEA
301: KLADFGLARI VRGSPAKSHV STQAAGTAGY VAPEIWDGVG ATAKADVYSF GVLLIEIVTG HRPSWPMKAS MGDKEVNLVD WAREKIGADE ASGILDRRMG
401: IEAQGKEMEE AKALLEIARR CIDNAAKNRP TMEEAVAMLS KI

Best Arabidopsis Sequence Match ( AT5G42440.1 )
(BLAST)

001: MDYQISLILA TSISSIFLLL IVFTVVMIVC RRRPPIQNHP RRNRNFPDPD PDLNTETVTE SFDPSICEIS MAELTIATKN FSSDLIVGDG SFGLVYRAQL
101: SNGVVVAVKK LDHDALQGFR EFAAEMDTLG RLNHPNIVRI LGYCISGSDR ILIYEFLEKS SLDYWLHETD EENSPLTWST RVNITRDVAK GLAYLHGLPK
201: PIIHRDIKSS NVLLDSDFVA HIADFGLARR IDASRSHVST QVAGTMGYMP PEYWEGNTAA TVKADVYSFG VLMLELATRR RPNLTVVVDE KEVGLAQWAV
301: IMVEQNRCYE MLDFGGVCGS EKGVEEYFRI ACLCIKESTR ERPTMVQVVE LLEELCRFM

Arabidopsis Description

At5g42440 [Source:UniProtKB/TrEMBL;Acc:Q9FIH3]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.