CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
plasma membrane 7
extracellular 4
endoplasmic reticulum 4
vacuole 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42440.1	KRH22291	AT2G42580.1	19000166
AT5G42440.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35107	Soybean	plasma membrane	84.37	85.05
KRG94081	Soybean	plasma membrane	39.62	61.0
VIT_18s0072g00170.t01	Wine grape	plasma membrane	57.41	58.52
KRG94367	Soybean	plasma membrane	43.13	54.79
CDY14753	Canola	plasma membrane	53.37	54.4
AT5G42440.1	Thale cress	golgi, plasma membrane	52.29	54.04
Bra016962.1-P	Field mustard	plasma membrane	52.02	53.02
CDY68216	Canola	plasma membrane	52.02	53.02
Solyc04g071870.1.1	Tomato	plasma membrane	52.02	50.66
PGSC0003DMT400064560	Potato	plasma membrane	50.67	49.34
GSMUA_Achr10P...	Banana	plasma membrane	43.4	45.35
TraesCS4B01G111300.1	Wheat	plasma membrane	43.67	43.2
HORVU4Hr1G020000.1	Barley	plasma membrane	43.4	43.16
TraesCS4D01G109000.1	Wheat	plasma membrane	43.13	42.67
TraesCS4A01G207800.1	Wheat	plasma membrane	42.59	42.13
Zm00001d053133_P001	Maize	cytosol, peroxisome, plasma membrane	40.97	36.45
KXG27836	Sorghum	plastid	39.35	33.03
Os11t0168600-01	Rice	cytosol, plasma membrane	8.63	32.32

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100305364	MapMan:18.4.1.10.2	Gene3D:3.30.200.20	EMBL:ACUP02012699	UniProt:C6FF72
EMBL:EU888324	EnsemblPlantsGene:GLYMA_20G169000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	EnsemblPlants:KRG91688	ProteinID:KRG91688	ProteinID:KRG91688.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069
PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27006	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI0001AAAB33

Description

hypothetical protein

Coordinates

chr20:+:40680059..40682502

Molecular Weight (calculated)

41823.3 Da

IEP (calculated)

7.501

GRAVY (calculated)

-0.249

Length

371 amino acids

Sequence
(BLAST)

001: MEHAFLAIVA ATASFFVVML LLSAAILLCQ HHRNSTKAPT RSTSQIRTRS APHRDASSRS VLENWSSDPN LIKISWEELA RATDNFSPHL IVGDGSFGLV
101: YKARLSNGAT VAVKKLSPDA FQGFREFTAE METLSRLRHP NIVKILGYWA SGPERLLVYE FIEKGNLDQW LHEPDLSRSP LPWPTRVHII RGVAHGLSYL
201: HGLDKPVIHR DIKASNILLD SNFQAHIADF GLARRIDNTR THVSTQFAGT MGYMPPEYIE GSNVANTKVD VYSFGILMIE TASSHRPNLP MKLGTDDIGM
301: VQWARKMKEN NAEMEMVDVN IGLRGEEESV KEYVRIACEC TREMQKERPE MPQVVQWLDS MSLSTKPFHL V

Best Arabidopsis Sequence Match ( AT5G42440.1 )
(BLAST)

001: MDYQISLILA TSISSIFLLL IVFTVVMIVC RRRPPIQNHP RRNRNFPDPD PDLNTETVTE SFDPSICEIS MAELTIATKN FSSDLIVGDG SFGLVYRAQL
101: SNGVVVAVKK LDHDALQGFR EFAAEMDTLG RLNHPNIVRI LGYCISGSDR ILIYEFLEKS SLDYWLHETD EENSPLTWST RVNITRDVAK GLAYLHGLPK
201: PIIHRDIKSS NVLLDSDFVA HIADFGLARR IDASRSHVST QVAGTMGYMP PEYWEGNTAA TVKADVYSFG VLMLELATRR RPNLTVVVDE KEVGLAQWAV
301: IMVEQNRCYE MLDFGGVCGS EKGVEEYFRI ACLCIKESTR ERPTMVQVVE LLEELCRFM

Arabidopsis Description

At5g42440 [Source:UniProtKB/TrEMBL;Acc:Q9FIH3]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.