CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42440.1	CDY42827	AT2G42580.1	19000166
AT5G42440.1	CDY51514	AT2G42580.1	19000166
AT5G42440.1	CDY55390	AT2G42580.1	19000166
AT5G42440.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68216	Canola	plasma membrane	95.6	95.6
AT5G42440.1	Thale cress	golgi, plasma membrane	69.78	70.75
VIT_18s0072g00170.t01	Wine grape	plasma membrane	57.42	57.42
KRG91688	Soybean	plasma membrane	54.4	53.37
KRH35107	Soybean	plasma membrane	53.3	52.72
PGSC0003DMT400064560	Potato	plasma membrane	51.1	48.82
Solyc04g071870.1.1	Tomato	plasma membrane	50.82	48.56
GSMUA_Achr10P...	Banana	plasma membrane	46.43	47.61
TraesCS4D01G109000.1	Wheat	plasma membrane	45.88	44.53
TraesCS4A01G207800.1	Wheat	plasma membrane	45.88	44.53
TraesCS4B01G111300.1	Wheat	plasma membrane	45.88	44.53
HORVU4Hr1G020000.1	Barley	plasma membrane	45.33	44.24
KRG94081	Soybean	plasma membrane	27.47	41.49
Zm00001d053133_P001	Maize	cytosol, peroxisome, plasma membrane	43.68	38.13
KXG27836	Sorghum	plastid	45.05	37.1
Os11t0168600-01	Rice	cytosol, plasma membrane	9.89	36.36
KRG94367	Soybean	plasma membrane	28.3	35.27

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.10.2	Gene3D:3.30.200.20	GO:A0A078FQZ6	UniProt:A0A078FQZ6	EnsemblPlants:CDY14753
ProteinID:CDY14753	ProteinID:CDY14753.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00084605001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF07714
PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27000	PANTHER:PTHR27000:SF48
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS
TMHMM:TMhelix	UniParc:UPI0004EEB010	SEG:seg	:	:	:

Description

BnaC04g47500DBnaC04g47500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQZ6]

Coordinates

chrLK032047:-:81967..83351

Molecular Weight (calculated)

40296.3 Da

IEP (calculated)

6.681

GRAVY (calculated)

-0.036

Length

364 amino acids

Sequence
(BLAST)

001: MDYRLLAILA TSASSIFILL LLIFTIFLCR RRHAIQNHPR RDQSHHQRST PNSSTALNPA VSSESTSFDP SIREISMSEL SSATNNFSSD LIVGDGSFGL
101: VYRAKLSNGL VVAVKKLDRD ALQGLREFTA EMETLGSLRH PNIVQILGYC ISGPDRVLIY EFLEKGSLDD WLHEKTVNAS YALPWATRLS IAYGVAKGLA
201: FLHGLPKPII HRDIKSSNVL LDSDFAAHIA DFGLARSIDA SRSHVSTQVA GTMGYMPPEY WEGNTAATVK TDVYSFGVLM LEMATQKRPN WPVVVDGKEV
301: GLAQWAVMLE GKNRYNEMVV SSFVGEKGVD EYFGIASLCI KESSKERPTM NQVVKLLEEV FVSE

Best Arabidopsis Sequence Match ( AT5G42440.1 )
(BLAST)

001: MDYQISLILA TSISSIFLLL IVFTVVMIVC RRRPPIQNHP RRNRNFPDPD PDLNTETVTE SFDPSICEIS MAELTIATKN FSSDLIVGDG SFGLVYRAQL
101: SNGVVVAVKK LDHDALQGFR EFAAEMDTLG RLNHPNIVRI LGYCISGSDR ILIYEFLEKS SLDYWLHETD EENSPLTWST RVNITRDVAK GLAYLHGLPK
201: PIIHRDIKSS NVLLDSDFVA HIADFGLARR IDASRSHVST QVAGTMGYMP PEYWEGNTAA TVKADVYSFG VLMLELATRR RPNLTVVVDE KEVGLAQWAV
301: IMVEQNRCYE MLDFGGVCGS EKGVEEYFRI ACLCIKESTR ERPTMVQVVE LLEELCRFM

Arabidopsis Description

At5g42440 [Source:UniProtKB/TrEMBL;Acc:Q9FIH3]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.