CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 8
extracellular 4
endoplasmic reticulum 4
vacuole 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42440.1	KRH22291	AT2G42580.1	19000166
AT5G42440.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94367	Soybean	plasma membrane	58.51	48.29
KRH35107	Soybean	plasma membrane	70.12	45.92
KRG91688	Soybean	plasma membrane	61.0	39.62
VIT_18s0072g00170.t01	Wine grape	plasma membrane	44.81	29.67
CDY14753	Canola	plasma membrane	41.49	27.47
Bra016962.1-P	Field mustard	plasma membrane	39.83	26.37
CDY68216	Canola	plasma membrane	39.83	26.37
PGSC0003DMT400064560	Potato	plasma membrane	40.66	25.72
Solyc04g071870.1.1	Tomato	plasma membrane	40.66	25.72
AT5G42440.1	Thale cress	golgi, plasma membrane	37.76	25.35
HORVU4Hr1G020000.1	Barley	plasma membrane	38.59	24.93
TraesCS4B01G111300.1	Wheat	plasma membrane	38.59	24.8
GSMUA_Achr10P...	Banana	plasma membrane	36.1	24.51
TraesCS4D01G109000.1	Wheat	plasma membrane	37.34	24.0
TraesCS4A01G207800.1	Wheat	plasma membrane	36.93	23.73
Zm00001d053133_P001	Maize	cytosol, peroxisome, plasma membrane	37.76	21.82
KXG27836	Sorghum	plastid	36.1	19.68
Os11t0168600-01	Rice	cytosol, plasma membrane	0.41	1.01

Protein Annotations

Gene3D:3.30.200.20	MapMan:50.2.7	EMBL:ACUP02011713	EnsemblPlantsGene:GLYMA_19G060800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023
InterPro:IPR000719	UniProt:K7MWV1	EnsemblPlants:KRG94081	ProteinID:KRG94081	ProteinID:KRG94081.1	InterPro:Kinase-like_dom_sf
PFAM:PF07714	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF32	InterPro:Prot_kinase_dom	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	TMHMM:TMhelix	UniParc:UPI0002951EB2	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:12180711..12181489

Molecular Weight (calculated)

26671.1 Da

IEP (calculated)

6.942

GRAVY (calculated)

0.031

Length

241 amino acids

Sequence
(BLAST)

001: MEHALQAIIA SIGNFFVVTL LLVDAILLCQ HHRNSTKTRT RSSHIRTCPA PHREASSSLS VVDASWSFDT NLVKISWDEL ARATDNFSPH FIIDDNSFGL
101: VCKACLSSGV TVTVKKLSLD AFQGFYKFTA EMETLSRLCH PNIVKNLSYW ALGPERLLVY EFIEKGSLDQ WLHKPDISLS LPPLPWPILV NIIRGMALEE
201: VAAQHLHGLR DGSVGEHCHW NPMIAGGAGC DVREGRGQGS V

Best Arabidopsis Sequence Match ( AT5G42440.1 )
(BLAST)

001: MDYQISLILA TSISSIFLLL IVFTVVMIVC RRRPPIQNHP RRNRNFPDPD PDLNTETVTE SFDPSICEIS MAELTIATKN FSSDLIVGDG SFGLVYRAQL
101: SNGVVVAVKK LDHDALQGFR EFAAEMDTLG RLNHPNIVRI LGYCISGSDR ILIYEFLEKS SLDYWLHETD EENSPLTWST RVNITRDVAK GLAYLHGLPK
201: PIIHRDIKSS NVLLDSDFVA HIADFGLARR IDASRSHVST QVAGTMGYMP PEYWEGNTAA TVKADVYSFG VLMLELATRR RPNLTVVVDE KEVGLAQWAV
301: IMVEQNRCYE MLDFGGVCGS EKGVEEYFRI ACLCIKESTR ERPTMVQVVE LLEELCRFM

Arabidopsis Description

At5g42440 [Source:UniProtKB/TrEMBL;Acc:Q9FIH3]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.