Factsheet for VIT_18s0072g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42440.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT5G42440.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G42440.1	Thale cress	golgi, plasma membrane	57.69	58.5
KRH35107	Soybean	plasma membrane	58.24	57.61
CDY14753	Canola	plasma membrane	57.42	57.42
KRG91688	Soybean	plasma membrane	58.52	57.41
Solyc04g071870.1.1	Tomato	plasma membrane	59.07	56.43
Bra016962.1-P	Field mustard	plasma membrane	56.04	56.04
CDY68216	Canola	plasma membrane	56.04	56.04
PGSC0003DMT400064560	Potato	plasma membrane	57.97	55.38
GSMUA_Achr10P...	Banana	plasma membrane	51.37	52.68
KRG94081	Soybean	plasma membrane	29.67	44.81
TraesCS4B01G111300.1	Wheat	plasma membrane	44.51	43.2
TraesCS4D01G109000.1	Wheat	plasma membrane	44.51	43.2
HORVU4Hr1G020000.1	Barley	plasma membrane	44.23	43.16
TraesCS4A01G207800.1	Wheat	plasma membrane	43.41	42.13
KRG94367	Soybean	plasma membrane	29.4	36.64
Zm00001d053133_P001	Maize	cytosol, peroxisome, plasma membrane	41.21	35.97
KXG27836	Sorghum	plastid	40.93	33.71
Os11t0168600-01	Rice	cytosol, plasma membrane	8.79	32.32

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100854787	wikigene:100854787	MapMan:18.4.1.10.2	Gene3D:3.30.200.20	EMBL:AM446297
ProteinID:CAN65219	ProteinID:CAN65219.1	ProteinID:CCB44895	ProteinID:CCB44895.1	UniProt:F6GY59	EMBL:FN594968
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100854787	wikigene:LOC100854787	PFAM:PF07714	PIRSF:PIRSF000654
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27006	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TIGR:TC55244	TMHMM:TMhelix
UniParc:UPI000198551A	ArrayExpress:VIT_18s0072g00170	EnsemblPlantsGene:VIT_18s0072g00170	EnsemblPlants:VIT_18s0072g00170.t01	unigene:Vvi.10367	RefSeq:XP_003634521
RefSeq:XP_003634521.1	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:19223736..19225256

Molecular Weight (calculated)

40693.0 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.057

Length

364 amino acids

Sequence
(BLAST)

001: MPPAFEAILA ATASFFFITL FLAVILIVCR GLKQRRSSEP RTRPIQSSSL TSISVGESAT FDPSLKRISM GELLAATRNF ASDGIIGDGS FGMVYKACLS
101: NGVTVAVKKL SPDAFQGFRE FRAETETLAK LQHRNIVQIL GYCVSGSDRV LIYEFIEKGS LDQWLHDTSE DQQLSTPRLP LSWETRLKII RGVADGLSYL
201: HNLDTPIIHR DIKASNVLLD SEFEPHIADF GLARRIEWSH SHVSTQVAGT MGYMPPEYRE GVTVATVKAD VYSFGILMIE IATGRRPNLP TRLDGTDVGI
301: VQWARKMVAQ ERHMEMVDSN VSREGLRENE VRELFRIAHL CTSEISRDRP PISLVVDLLY QLFS

Best Arabidopsis Sequence Match ( AT5G42440.1 )
(BLAST)

001: MDYQISLILA TSISSIFLLL IVFTVVMIVC RRRPPIQNHP RRNRNFPDPD PDLNTETVTE SFDPSICEIS MAELTIATKN FSSDLIVGDG SFGLVYRAQL
101: SNGVVVAVKK LDHDALQGFR EFAAEMDTLG RLNHPNIVRI LGYCISGSDR ILIYEFLEKS SLDYWLHETD EENSPLTWST RVNITRDVAK GLAYLHGLPK
201: PIIHRDIKSS NVLLDSDFVA HIADFGLARR IDASRSHVST QVAGTMGYMP PEYWEGNTAA TVKADVYSFG VLMLELATRR RPNLTVVVDE KEVGLAQWAV
301: IMVEQNRCYE MLDFGGVCGS EKGVEEYFRI ACLCIKESTR ERPTMVQVVE LLEELCRFM

Arabidopsis Description

At5g42440 [Source:UniProtKB/TrEMBL;Acc:Q9FIH3]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.