Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- plasma membrane 7
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42440.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT5G42440.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68216 | Canola | plasma membrane | 99.73 | 99.73 |
| AT5G42440.1 | Thale cress | golgi, plasma membrane | 68.96 | 69.92 |
| VIT_18s0072g00170.t01 | Wine grape | plasma membrane | 56.04 | 56.04 |
| KRG91688 | Soybean | plasma membrane | 53.02 | 52.02 |
| KRH35107 | Soybean | plasma membrane | 52.2 | 51.63 |
| PGSC0003DMT400064560 | Potato | plasma membrane | 50.27 | 48.03 |
| Solyc04g071870.1.1 | Tomato | plasma membrane | 50.27 | 48.03 |
| GSMUA_Achr10P... | Banana | plasma membrane | 46.43 | 47.61 |
| TraesCS4D01G109000.1 | Wheat | plasma membrane | 45.05 | 43.73 |
| TraesCS4A01G207800.1 | Wheat | plasma membrane | 45.05 | 43.73 |
| TraesCS4B01G111300.1 | Wheat | plasma membrane | 45.05 | 43.73 |
| HORVU4Hr1G020000.1 | Barley | plasma membrane | 44.51 | 43.43 |
| KRG94081 | Soybean | plasma membrane | 26.37 | 39.83 |
| Zm00001d053133_P001 | Maize | cytosol, peroxisome, plasma membrane | 43.13 | 37.65 |
| KXG27836 | Sorghum | plastid | 43.96 | 36.2 |
| Os11t0168600-01 | Rice | cytosol, plasma membrane | 9.62 | 35.35 |
| KRG94367 | Soybean | plasma membrane | 27.47 | 34.25 |
Protein Annotations
| Gene3D:1.10.510.10 | MapMan:18.4.1.10.2 | Gene3D:3.30.200.20 | EnsemblPlantsGene:Bra016962 | EnsemblPlants:Bra016962.1 | EnsemblPlants:Bra016962.1-P |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 | GO:GO:0004674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 |
| InterPro:IPR000719 | InterPro:Kinase-like_dom_sf | UniProt:M4DKD3 | PFAM:PF07714 | PIRSF:PIRSF000654 | ScanProsite:PS00107 |
| ScanProsite:PS00108 | PFscan:PS50011 | PANTHER:PTHR27000 | PANTHER:PTHR27000:SF48 | InterPro:Prot_kinase_dom | InterPro:Protein_kinase_ATP_BS |
| SMART:SM00220 | SUPFAM:SSF56112 | InterPro:Ser-Thr/Tyr_kinase_cat_dom | InterPro:Ser/Thr_kinase_AS | TMHMM:TMhelix | UniParc:UPI00025452E5 |
| SEG:seg | : | : | : | : | : |
Description
AT5G42440 (E=1e-128) | protein kinase family protein
Coordinates
chrA04:-:17384472..17385566
Molecular Weight (calculated)
40420.4 Da
IEP (calculated)
6.429
GRAVY (calculated)
-0.087
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYKLPAILA ASASSIFIIL LLIFTIFLCR RRHAIQNHPR RDQSHHQRST PNSSTALNPA VSSESTSFDP SIRERSMSEL SLATNNFSSD LIVGDGSFGL
101: VYRAKLSDGL VVAVKKLDRD ALQGLREFTA EMETLGSLRH PNVVRILGYC ISGPDRVLIY EFLEKGSLDD WLHEKTVNAS YALPWATRLS IAYDVAKGLA
201: YLHGLPKPII HRDIKYSNVL LDSDFAAQIA DFGLARSIDA SRSHVSTQVA GTMGYMPPEY WEGNTAATVK TDVYSFGVLM LEMATQKRPN WTVVVDGKEV
301: GLAQWAVMLE GKNRYNEMVE SSFVGEKGVD EYFGIASLCI KESSKERPTM SQVVKLLEEV LVSE
101: VYRAKLSDGL VVAVKKLDRD ALQGLREFTA EMETLGSLRH PNVVRILGYC ISGPDRVLIY EFLEKGSLDD WLHEKTVNAS YALPWATRLS IAYDVAKGLA
201: YLHGLPKPII HRDIKYSNVL LDSDFAAQIA DFGLARSIDA SRSHVSTQVA GTMGYMPPEY WEGNTAATVK TDVYSFGVLM LEMATQKRPN WTVVVDGKEV
301: GLAQWAVMLE GKNRYNEMVE SSFVGEKGVD EYFGIASLCI KESSKERPTM SQVVKLLEEV LVSE
001: MDYQISLILA TSISSIFLLL IVFTVVMIVC RRRPPIQNHP RRNRNFPDPD PDLNTETVTE SFDPSICEIS MAELTIATKN FSSDLIVGDG SFGLVYRAQL
101: SNGVVVAVKK LDHDALQGFR EFAAEMDTLG RLNHPNIVRI LGYCISGSDR ILIYEFLEKS SLDYWLHETD EENSPLTWST RVNITRDVAK GLAYLHGLPK
201: PIIHRDIKSS NVLLDSDFVA HIADFGLARR IDASRSHVST QVAGTMGYMP PEYWEGNTAA TVKADVYSFG VLMLELATRR RPNLTVVVDE KEVGLAQWAV
301: IMVEQNRCYE MLDFGGVCGS EKGVEEYFRI ACLCIKESTR ERPTMVQVVE LLEELCRFM
101: SNGVVVAVKK LDHDALQGFR EFAAEMDTLG RLNHPNIVRI LGYCISGSDR ILIYEFLEKS SLDYWLHETD EENSPLTWST RVNITRDVAK GLAYLHGLPK
201: PIIHRDIKSS NVLLDSDFVA HIADFGLARR IDASRSHVST QVAGTMGYMP PEYWEGNTAA TVKADVYSFG VLMLELATRR RPNLTVVVDE KEVGLAQWAV
301: IMVEQNRCYE MLDFGGVCGS EKGVEEYFRI ACLCIKESTR ERPTMVQVVE LLEELCRFM
Arabidopsis Description
At5g42440 [Source:UniProtKB/TrEMBL;Acc:Q9FIH3]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.